Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

58351862 .. 58353424

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTACGGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTCTTTACTCCGCTGAGAGTTGTCCACCCTCCTTCTGTAATGAGACAGTAGCTAGAATCTCCTTCCCCTTTAAAAACACAACACCCAGTCGTCCTGAATGCGGATTCTACACTCTTGACTGTTCTGACCACCTTAAACCGAAGATTCAACTCAAAGATGGCGGATACTGGTTTCAATTGGAAAGCACTTATCGATCAGATTCCGTTTTTATCAATGACGGCCGGCTTCAGGAGCGCATAGGGCGCTTAAAAGGAGATACATGTGATGATGATGTTTTCAATGATTTAAGTCTTCCAGGCCCTACTCCCATCTTCTATACACACCCACACAACCTTACCCTGTTCAAATGCAACAAGACTCCTCCTTACAAGGGTCCTAACTATGCCTGCACGAGTGTAAATCATATTTACTATAATGTATCAAATCCTAGTTTAAATTGCTCAGCCATTCAGATCCCCATACGTCCAGGTTTTCCTTCCAATGTCTATAATGCTTCTGCATTGACTGCTAAATTCTCCCTTCATTTTAATTGCTTGGATGATCATGGAGAATGGAAGTGTGGCCCCCCACCACAAAGTATATGTTGGAATCAGACGGGAGAATTCATTTGTCCCCCCACACCAGAAGGAAATCATCATTTGGGTTTGAAGCTAGGACTCGGTAAGATAGATCTCTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

243

Amino Acids

27.21

Weight (kDa)

6.48

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	60, 150, 210
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	560, 650
AcuI	CTGAAG	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	149, 277, 419
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	6 cut(s)	197, 224, 328, 394, 697, 727
AjnI	CCWGG	2 cut(s)	343, 514
AluBI	AGCT	2 cut(s)	101, 700
AluI	AGCT	2 cut(s)	101, 700
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	496
AoxI	GGCC	3 cut(s)	268, 346, 610
ApoI	RAATTY	2 cut(s)	560, 650
AspLEI	GCGC	2 cut(s)	285, 294
AspS9I	GGNCC	3 cut(s)	347, 422, 611
AvaII	GGWCC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	25, 332
BccI	CCATC	2 cut(s)	200, 365
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	345, 516
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	3 cut(s)	102, 477, 701
BfoI	RGCGCY	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	718
BlpI	GCTNAGC	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	345, 516
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	347, 422, 611
BmiI	GGNNCC	2 cut(s)	423, 613
BmrFI	CCNGG	2 cut(s)	345, 516
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	25, 332
Bpu1102I	GCTNAGC	1 cut(s)	490
Bsa29I	ATCGAT	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 277, 419
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	135, 221
BseBI	CCWGG	2 cut(s)	345, 516
BseCI	ATCGAT	1 cut(s)	241
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	3 cut(s)	149, 277, 419
BseMII	CTCAG	2 cut(s)	54, 504
BseNI	ACTGG	2 cut(s)	135, 221
BseRI	GAGGAG	1 cut(s)	399
BseX3I	CGGCCG	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	421
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	270, 348, 612
BshVI	ATCGAT	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	3 cut(s)	149, 277, 419
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	270, 348, 612
Bsp143I	GATC	4 cut(s)	242, 501, 589, 718
Bsp1720I	GCTNAGC	1 cut(s)	490
BspACI	CCGC	3 cut(s)	60, 150, 210
BspANI	GGCC	3 cut(s)	270, 348, 612
BspCNI	CTCAG	2 cut(s)	55, 503
BspDI	ATCGAT	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	423, 613
BspPI	GGATC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	135, 221
BssAI	RCCGGY	1 cut(s)	270
BssMI	GATC	4 cut(s)	242, 501, 589, 718
BssSI	CACGAG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	345, 516
Bst4CI	ACNGT	3 cut(s)	10, 97, 170
Bst6I	CTCTTC	1 cut(s)	728
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	272, 436
BstDEI	CTNAG	2 cut(s)	63, 490
BstF5I	GGATG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	285, 294
BstKTI	GATC	4 cut(s)	245, 504, 592, 721
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	242, 501, 589, 718
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 554
BstNI	CCWGG	2 cut(s)	345, 516
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	343, 514
BstV2I	GAAGAC	2 cut(s)	25, 332
BstX2I	RGATCY	2 cut(s)	501, 718
BstYI	RGATCY	2 cut(s)	501, 718
BstZI	CGGCCG	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	270, 348, 612
BsuTUI	ATCGAT	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	272, 436
CfoI	GCGC	2 cut(s)	285, 294
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	347, 422, 611
ClaI	ATCGAT	1 cut(s)	241
CviAII	CATG	2 cut(s)	309, 593
CviJI	RGCY	9 cut(s)	5, 14, 101, 270, 274, 348, 494, 612, 700
CviKI_1	RGCY	9 cut(s)	5, 14, 101, 270, 274, 348, 494, 612, 700
DdeI	CTNAG	2 cut(s)	63, 490
DpnI	GATC	4 cut(s)	244, 503, 591, 720
DpnII	GATC	4 cut(s)	242, 501, 589, 718
DraI	TTTAAA	2 cut(s)	121, 483
EaeI	YGGCCR	1 cut(s)	268
EagI	CGGCCG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	728
EarI	CTCTTC	1 cut(s)	728
EciI	GGCGGA	1 cut(s)	225
EclXI	CGGCCG	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	422
Eco52I	CGGCCG	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	260
EcoO109I	RGGNCCY	2 cut(s)	347, 422
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	2 cut(s)	343, 514
FaeI	CATG	2 cut(s)	312, 596
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	2 cut(s)	308, 592
FbaI	TGATCA	1 cut(s)	589
FokI	GGATG	1 cut(s)	599
FspBI	CTAG	3 cut(s)	102, 477, 701
GlaI	GCGC	2 cut(s)	284, 293
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	270, 348, 612
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	2 cut(s)	285, 294
Hin1II	CATG	2 cut(s)	312, 596
Hin6I	GCGC	2 cut(s)	283, 292
HinP1I	GCGC	2 cut(s)	283, 292
HinfI	GANTC	7 cut(s)	105, 153, 193, 248, 406, 637, 705
HpaII	CCGG	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	4 cut(s)	175, 247, 501, 642
Hpy188III	TCNNGA	3 cut(s)	143, 164, 278
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	91, 121, 534, 578, 668
HpyCH4III	ACNGT	3 cut(s)	10, 97, 170
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	3 cut(s)	399, 438, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 554
HpyF3I	CTNAG	2 cut(s)	63, 490
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	2 cut(s)	312, 596
HspAI	GCGC	2 cut(s)	283, 292
KroI	GCCGGC	1 cut(s)	270
KroNI	GCCGGC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	242, 501, 589, 718
LmnI	GCTCC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	102, 477, 701
MaeII	ACGT	1 cut(s)	511
MalI	GATC	4 cut(s)	244, 503, 591, 720
MboI	GATC	4 cut(s)	242, 501, 589, 718
MboII	GAAGA	6 cut(s)	25, 35, 202, 332, 352, 715
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	2 cut(s)	501, 718
MluCI	AATT	6 cut(s)	224, 484, 560, 577, 650, 727
MlyI	GAGTC	2 cut(s)	400, 699
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	2 cut(s)	88, 420
MroNI	GCCGGC	1 cut(s)	270
MseI	TTAA	7 cut(s)	120, 183, 296, 335, 482, 576, 730
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	345, 516
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	2 cut(s)	345, 516
MwoI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 554
NaeI	GCCGGC	1 cut(s)	272
NdeII	GATC	4 cut(s)	242, 501, 589, 718
NgoMIV	GCCGGC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	312, 596
NlaIV	GGNNCC	2 cut(s)	423, 613
NspI	RCATGY	1 cut(s)	312
PciI	ACATGT	1 cut(s)	308
PctI	GAATGC	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	272
PfeI	GAWTC	5 cut(s)	105, 153, 193, 248, 637
PleI	GAGTC	2 cut(s)	400, 699
PpsI	GAGTC	2 cut(s)	400, 699
PpuMI	RGGWCCY	1 cut(s)	422
PscI	ACATGT	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	343, 514
PspGI	CCWGG	2 cut(s)	343, 514
PspN4I	GGNNCC	2 cut(s)	423, 613
PspPI	GGNCC	3 cut(s)	347, 422, 611
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	501, 718
SaqAI	TTAA	7 cut(s)	120, 183, 296, 335, 482, 576, 730
Sau3AI	GATC	4 cut(s)	242, 501, 589, 718
Sau96I	GGNCC	3 cut(s)	347, 422, 611
SchI	GAGTC	2 cut(s)	400, 699
ScrFI	CCNGG	2 cut(s)	345, 516
SetI	ASST	6 cut(s)	103, 183, 384, 514, 520, 702
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	6 cut(s)	224, 484, 560, 577, 650, 727
SsiI	CCGC	3 cut(s)	60, 150, 210
SspMI	CTAG	3 cut(s)	102, 477, 701
StyD4I	CCNGG	2 cut(s)	343, 514
TaaI	ACNGT	3 cut(s)	10, 97, 170
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	1 cut(s)	241
TasI	AATT	6 cut(s)	224, 484, 560, 577, 650, 727
TfiI	GAWTC	5 cut(s)	105, 153, 193, 248, 637
Tru1I	TTAA	7 cut(s)	120, 183, 296, 335, 482, 576, 730
Tru9I	TTAA	7 cut(s)	120, 183, 296, 335, 482, 576, 730
TspDTI	ATGAA	2 cut(s)	560, 643
TspGWI	ACGGA	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	560, 650
XceI	RCATGY	1 cut(s)	312
XspI	CTAG	3 cut(s)	102, 477, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.