Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Reverse (-)

30438306 .. 30439517

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G315200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCCCGTGGCTTTGTTTATTTTCTCTCTTCTCACTCATCTAGTGGTTCTTCACTCTAACGAAGAGTTGAAAATCAACAAAGGCTGTCCTCCCGAAGAATGTCAGACGCATCTTCCTGAATGCGACGGGTTGTTCACAGTTGATTGTTCTGATCGAGATAATCCGAGGATCCAACTGAAAGAGGAAGGATACTGGCATGAATTTGAGATCATCCCTGAACCAAATATGATTTTGATCAATGACCGCAAGCTTGAGCAGCGTTTGAAAACAAATTCCTGCAATGATCAAGTTTTCAACGACTTGAGTCTTCCCGGCCTTTCTCCAGTCTTTGATGAATTATTCGCACCCAATCTGACCCTCATCAAATGCAGCACCCCACTCCACGATACAGATCTTAACTACGGCTGCAGAAATCATAACTATAATTACTATACTACTTCGCCTGATCATAGTTTACCAAGTCTCCCACCATCATGTTCCGTGTTTCAGATGCCCAAGGATCCATATAAACCTTTCTTCAGTCTTTCTGCATTGACTACTACGTTTCAACTTCTATTTCGAGTAAGAGAAGAATGCCATGTTGACAAGGGAAAATTTAAGTGTTCCGTTAGAGAAAAAGGAGATAAATTGGGATTGACGCTAGGACTAGGTAAGATTGACATCTCTGAAGTTAAATATATAATTGATCTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

233

Amino Acids

26.49

Weight (kDa)

5.35

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	4 cut(s)	166, 179, 497, 510
AcsI	RAATTY	3 cut(s)	203, 274, 596
AcuI	CTGAAG	2 cut(s)	505, 690
AgsI	TTSAA	4 cut(s)	73, 268, 298, 551
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	4 cut(s)	166, 179, 497, 510
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	259, 372, 408
ApoI	RAATTY	3 cut(s)	203, 274, 596
AsuC2I	CCSGG	1 cut(s)	315
BamHI	GGATCC	2 cut(s)	171, 502
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	271, 384, 395
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	3 cut(s)	237, 286, 448
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	4 cut(s)	44, 644, 650, 697
BfmI	CTRYAG	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	3 cut(s)	260, 373, 409
BlsI	GCNGC	3 cut(s)	261, 374, 410
Bme1390I	CCNGG	1 cut(s)	315
BmiI	GGNNCC	3 cut(s)	6, 173, 504
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	121, 483
BoxI	GACNNNNGTC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	275, 325
BpuMI	CCSGG	1 cut(s)	315
BsaBI	GATNNNNATC	3 cut(s)	236, 393, 662
BsaJI	CCNNGG	3 cut(s)	9, 167, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bse1I	ACTGG	2 cut(s)	200, 326
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	3 cut(s)	236, 393, 662
BseDI	CCNNGG	3 cut(s)	9, 167, 498
BseGI	GGATG	1 cut(s)	213
BseJI	GATNNNNATC	3 cut(s)	236, 393, 662
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	200, 326
BseXI	GCAGC	3 cut(s)	271, 384, 395
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	470
BsmI	GAATGC	2 cut(s)	128, 581
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	318
BspLI	GGNNCC	3 cut(s)	6, 173, 504
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	4 cut(s)	166, 179, 497, 510
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	200, 326
BssECI	CCNNGG	3 cut(s)	9, 167, 498
BssMI	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	36, 60
BstC8I	GCNNGC	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	9 cut(s)	157, 174, 213, 240, 289, 397, 451, 505, 691
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 259
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	271, 384, 395
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	3 cut(s)	171, 394, 502
BstYI	RGATCY	3 cut(s)	171, 394, 502
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	251
CseI	GACGC	2 cut(s)	118, 649
CviAII	CATG	3 cut(s)	200, 477, 581
CviJI	RGCY	6 cut(s)	5, 14, 87, 253, 318, 408
CviKI_1	RGCY	6 cut(s)	5, 14, 87, 253, 318, 408
DpnI	GATC	9 cut(s)	156, 173, 212, 239, 288, 396, 450, 504, 690
DpnII	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
Eam1104I	CTCTTC	2 cut(s)	36, 60
EarI	CTCTTC	2 cut(s)	36, 60
Eco130I	CCWWGG	1 cut(s)	498
Eco57I	CTGAAG	2 cut(s)	505, 690
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	3 cut(s)	203, 480, 584
FatI	CATG	3 cut(s)	199, 476, 580
FbaI	TGATCA	3 cut(s)	237, 286, 448
Fnu4HI	GCNGC	3 cut(s)	260, 373, 409
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	3 cut(s)	260, 373, 409
FspBI	CTAG	4 cut(s)	44, 644, 650, 697
GluI	GCNGC	3 cut(s)	260, 373, 409
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	2 cut(s)	118, 649
Hin1II	CATG	3 cut(s)	203, 480, 584
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	138, 458, 586
Hpy188I	TCNGA	6 cut(s)	108, 154, 168, 357, 492, 670
Hpy188III	TCNNGA	3 cut(s)	95, 119, 158
Hpy8I	GTNNAC	3 cut(s)	138, 458, 586
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	4 cut(s)	282, 372, 411, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 259
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	3 cut(s)	203, 480, 584
Ksp22I	TGATCA	3 cut(s)	237, 286, 448
Kzo9I	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	132, 181, 231, 292, 328, 339, 459
Lsp1109I	GCAGC	3 cut(s)	271, 384, 395
LweI	GCATC	2 cut(s)	121, 483
MaeI	CTAG	4 cut(s)	44, 644, 650, 697
MaeII	ACGT	1 cut(s)	545
MalI	GATC	9 cut(s)	156, 173, 212, 239, 288, 396, 450, 504, 690
MboI	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
MboII	GAAGA	8 cut(s)	23, 44, 77, 107, 110, 302, 511, 584
MflI	RGATCY	3 cut(s)	171, 394, 502
MluCI	AATT	7 cut(s)	203, 274, 338, 427, 596, 629, 684
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	4 cut(s)	102, 162, 178, 371
MseI	TTAA	3 cut(s)	399, 600, 675
MslI	CAYNNNNRTG	1 cut(s)	475
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	2 cut(s)	128, 581
MwoI	GCNNNNNNNGC	2 cut(s)	11, 259
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
NlaIII	CATG	3 cut(s)	203, 480, 584
NlaIV	GGNNCC	3 cut(s)	6, 173, 504
PctI	GAATGC	2 cut(s)	128, 581
PkrI	GCNGC	3 cut(s)	261, 374, 410
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PshAI	GACNNNNGTC	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	6, 173, 504
PstI	CTGCAG	1 cut(s)	413
PsuI	RGATCY	3 cut(s)	171, 394, 502
RseI	CAYNNNNRTG	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	399, 600, 675
SatI	GCNGC	3 cut(s)	260, 373, 409
Sau3AI	GATC	9 cut(s)	154, 171, 210, 237, 286, 394, 448, 502, 688
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	4 cut(s)	255, 517, 548, 655
SfaNI	GCATC	2 cut(s)	121, 483
SfcI	CTRYAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	2 cut(s)	254, 304
SmoI	CTYRAG	2 cut(s)	254, 304
Sse9I	AATT	7 cut(s)	203, 274, 338, 427, 596, 629, 684
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	4 cut(s)	44, 644, 650, 697
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	2 cut(s)	157, 562
TasI	AATT	7 cut(s)	203, 274, 338, 427, 596, 629, 684
Tru1I	TTAA	3 cut(s)	399, 600, 675
Tru9I	TTAA	3 cut(s)	399, 600, 675
TseI	GCWGC	3 cut(s)	259, 372, 408
TspDTI	ATGAA	2 cut(s)	216, 351
TspGWI	ACGGA	2 cut(s)	472, 598
XapI	RAATTY	3 cut(s)	203, 274, 596
XspI	CTAG	4 cut(s)	44, 644, 650, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.