Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

2750320 .. 2750838

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1038800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAATTGAAATCCCTTACCGGTCTTTGCCACAAAATCTTAGTCTCCCTTTATGGCTGCACCTCACGCCGCAGCCGCGAACTCCTCCTTGTCTACGAATACATTTCCAATGGAGCCGTTGCTGATCATCTCCACGAAGACAGAGCAGACCCTGGCTCACTCACTTGGCCTATTCATATGAACATTGCCATAGAAACCGCCAACACATTGTCCTACCTCCATGCTTCTGAAATTGTACATCGTGATGTGAAGACTACCAACATTCCGCTCGACGGCAACTTCTGCGTTAATGTTGCAGATTATGGGCTCTCCGGTCTCTTCCCCATTGATGTCACGCATGTCTCAATCGCTCCACAAGGGACACCAGGATGCGTTGATCCAGAGCATCACCAGTGTTACCAGCTAACTAGCAAGAGTGATGTTTATAGTTTCGGAGTTGTTCTCATGGAGCTCATATCATCTCTTCCGGCAGTTGATATAATGAGGCATAGGCACGAAGTTATTCTACCCCGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

173

Amino Acids

19.09

Weight (kDa)

6.08

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 153	5.8e-27	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	6 - 156	2.9e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	78
AciI	CCGC	4 cut(s)	70, 76, 198, 266
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	512
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	151, 364
AluBI	AGCT	2 cut(s)	403, 451
AluI	AGCT	2 cut(s)	403, 451
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	3 cut(s)	49, 320, 346
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	167, 512
ApeKI	GCWGC	2 cut(s)	57, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AsiGI	ACCGGT	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	501
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	309, 453
BarI	GAAGNNNNNNTAC	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	144, 257
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	44, 84
BceAI	ACGGC	2 cut(s)	101, 289
BciT130I	CCWGG	2 cut(s)	153, 366
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	49, 320, 346
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	4 cut(s)	58, 70, 73, 76
BlsI	GCNGC	4 cut(s)	59, 71, 74, 77
Bme1390I	CCNGG	3 cut(s)	153, 366, 511
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	3 cut(s)	153, 366, 511
BmsI	GCATC	2 cut(s)	359, 394
BpiI	GAAGAC	2 cut(s)	144, 257
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpuMI	CCSGG	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	151, 509
BsaWI	WCCGGW	2 cut(s)	20, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	153, 366
BseDI	CCNNGG	2 cut(s)	151, 509
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	44, 84
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	169, 514
BshTI	ACCGGT	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	21, 312, 467, 511
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	3 cut(s)	49, 320, 346
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	169, 514
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	309, 453
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	124, 376
BspACI	CCGC	4 cut(s)	70, 76, 198, 266
BspANI	GGCC	2 cut(s)	169, 514
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	151, 509
BssMI	GATC	2 cut(s)	124, 376
Bst2UI	CCWGG	2 cut(s)	153, 366
Bst6I	CTCTTC	2 cut(s)	323, 468
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	127, 379
BstMAI	GTCTC	3 cut(s)	49, 320, 346
BstMBI	GATC	2 cut(s)	124, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 75, 282
BstNI	CCWGG	2 cut(s)	153, 366
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	151, 364, 509
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	44, 84
BstV2I	GAAGAC	2 cut(s)	144, 257
BsuRI	GGCC	2 cut(s)	169, 514
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	236
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	3 cut(s)	221, 338, 445
CviJI	RGCY	9 cut(s)	57, 75, 116, 156, 169, 307, 403, 451, 514
CviKI_1	RGCY	9 cut(s)	57, 75, 116, 156, 169, 307, 403, 451, 514
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	126, 378
DpnII	GATC	2 cut(s)	124, 376
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	323, 468
EarI	CTCTTC	2 cut(s)	323, 468
Ecl136II	GAGCTC	1 cut(s)	451
Eco24I	GRGCYC	2 cut(s)	309, 453
Eco31I	GGTCTC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	151, 364
EcoT38I	GRGCYC	2 cut(s)	309, 453
FaeI	CATG	3 cut(s)	224, 341, 448
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	3 cut(s)	220, 337, 444
FauNDI	CATATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	58, 70, 73, 76
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	2 cut(s)	309, 453
Fsp4HI	GCNGC	4 cut(s)	58, 70, 73, 76
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	4 cut(s)	58, 70, 73, 76
HaeIII	GGCC	2 cut(s)	169, 514
HapII	CCGG	4 cut(s)	21, 312, 467, 511
Hin1II	CATG	3 cut(s)	224, 341, 448
HpaII	CCGG	4 cut(s)	21, 312, 467, 511
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	229, 434
Hpy188III	TCNNGA	2 cut(s)	242, 380
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	60, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 75, 282
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	3 cut(s)	224, 341, 448
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	124, 376
LmnI	GCTCC	3 cut(s)	113, 355, 448
Lsp1109I	GCAGC	2 cut(s)	44, 84
LweI	GCATC	2 cut(s)	359, 394
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	331, 395
MalI	GATC	2 cut(s)	126, 378
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	2 cut(s)	124, 376
MboII	GAAGA	4 cut(s)	149, 262, 310, 455
MhlI	GDGCHC	2 cut(s)	309, 453
MluCI	AATT	2 cut(s)	5, 231
MnlI	CCTC	4 cut(s)	73, 95, 227, 477
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	243, 367
MspI	CCGG	4 cut(s)	21, 312, 467, 511
MspR9I	CCNGG	3 cut(s)	153, 366, 511
MvaI	CCWGG	2 cut(s)	153, 366
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	66, 75, 282
NciI	CCSGG	1 cut(s)	511
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	2 cut(s)	124, 376
NlaIII	CATG	3 cut(s)	224, 341, 448
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	501
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	59, 71, 74, 77
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	151, 364
PspGI	CCWGG	2 cut(s)	151, 364
PspN4I	GGNNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	2 cut(s)	243, 367
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	4 cut(s)	58, 70, 73, 76
Sau3AI	GATC	2 cut(s)	124, 376
ScrFI	CCNGG	3 cut(s)	153, 366, 511
SduI	GDGCHC	2 cut(s)	309, 453
SetI	ASST	4 cut(s)	65, 219, 405, 453
SfaNI	GCATC	2 cut(s)	359, 394
SmiMI	CAYNNNNRTG	2 cut(s)	243, 367
Sse9I	AATT	2 cut(s)	5, 231
SsiI	CCGC	4 cut(s)	70, 76, 198, 266
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	151, 364, 509
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	5, 231
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	2 cut(s)	72, 78
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	57, 72
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	17, 164, 194
TspRI	CASTG	1 cut(s)	398
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.