Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Forward (+)

29644775 .. 29645499

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGAGGAGGTGAAAATGCTGCTGCATCGTCCGGTGACGTCGACTCTGGGTTGACAAAAGGAGCAGTCGCCGCTGGCGCTATCGCCGGACTCGCCGCTGTGGCTTTGGGCGTAGCTAAAATACTTTCGGATTCGTCATCATCAGGAGGGGAGAGAAAAACCATGAAAGCGCCCGGACAAGATAACCAGAGGATTGACAGGGACGAGTTTGAGCGTGACCCTGCTGACTATTTCAAAAACTTGCGCAAGTCGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

8.74

Weight (kDa)

8.01

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
Acc16I	TGCGCA	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	2 cut(s)	72, 96
AcyI	GRCGYC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	20, 23
AspLEI	GCGC	3 cut(s)	80, 172, 246
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	23, 47
BbvI	GCAGC	2 cut(s)	7, 10
BcnI	CCSGG	1 cut(s)	174
BfoI	RGCGCY	2 cut(s)	81, 173
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	4 cut(s)	21, 24, 72, 96
BlsI	GCNGC	4 cut(s)	22, 25, 73, 97
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	7, 10
BsiSI	CCGG	3 cut(s)	33, 87, 174
BslFI	GGGAC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	215
BspACI	CCGC	2 cut(s)	72, 96
BssNI	GRCGYC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	76
BstH2I	RGCGCY	2 cut(s)	81, 173
BstHHI	GCGC	3 cut(s)	80, 172, 246
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 77, 92, 101
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	7, 10
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	3 cut(s)	80, 172, 246
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	2 cut(s)	104, 116
CviKI_1	RGCY	2 cut(s)	104, 116
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	21, 24, 72, 96
Fsp4HI	GCNGC	4 cut(s)	21, 24, 72, 96
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	3 cut(s)	79, 171, 245
GluI	GCNGC	4 cut(s)	21, 24, 72, 96
HaeII	RGCGCY	2 cut(s)	81, 173
HapII	CCGG	3 cut(s)	33, 87, 174
HhaI	GCGC	3 cut(s)	80, 172, 246
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	3 cut(s)	78, 170, 244
HinP1I	GCGC	3 cut(s)	78, 170, 244
HincII	GTYRAC	2 cut(s)	43, 54
HindII	GTYRAC	2 cut(s)	43, 54
HinfI	GANTC	3 cut(s)	44, 90, 131
HpaII	CCGG	3 cut(s)	33, 87, 174
HphI	GGTGA	2 cut(s)	23, 47
Hpy166II	GTNNAC	2 cut(s)	43, 54
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	43, 54
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 77, 92, 101
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	3 cut(s)	78, 170, 244
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	9 cut(s)	33, 46, 60, 100, 129, 184, 187, 200, 234
Lsp1109I	GCAGC	2 cut(s)	7, 10
LweI	GCATC	1 cut(s)	35
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	35, 215
MlyI	GAGTC	2 cut(s)	38, 84
MnlI	CCTC	2 cut(s)	140, 183
MspA1I	CMGCKG	2 cut(s)	74, 98
MspI	CCGG	3 cut(s)	33, 87, 174
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	71, 77, 92, 101
NciI	CCSGG	1 cut(s)	174
NlaIII	CATG	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	35, 215
NsbI	TGCGCA	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	22, 25, 73, 97
PleI	GAGTC	2 cut(s)	38, 84
PpsI	GAGTC	2 cut(s)	38, 84
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	4 cut(s)	21, 24, 72, 96
SchI	GAGTC	2 cut(s)	38, 84
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	3 cut(s)	13, 42, 118
SfaNI	GCATC	1 cut(s)	35
SsiI	CCGC	2 cut(s)	72, 96
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	42, 251
TauI	GCSGC	2 cut(s)	74, 98
TfiI	GAWTC	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	35, 215
TseI	GCWGC	2 cut(s)	20, 23
Tsp45I	GTSAC	2 cut(s)	35, 215
TspDTI	ATGAA	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.