Rh4DG213600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002690
Physical Location & Seq
Reverse (-)
41063472 .. 41064183
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG213600.1

Sequence Viewer

Length: 297 bp
ATGGGAGGTGCCAAAGGAGGTGGTGGAGGAGGTGGTGCCATAGGCGGTGGCGGAGGAGGTACCAAAAGTGGCAGAGGAGGTGCCAAAAGTAGCGGTGGAGGAGGAGGTTCCAAAGGCGGTGGCAGCGGAAGTGCCAAAACTGGCCGTGGCGGAGGAAGAACTGGAGGGCAAGTGTTGTCGGGTGCCAGTTTTGGTGGAGCCATGAAGGCCCCTAGAAGAGATGCTACAATATCCAGGGACGTCTTTGAGAGTAACCCTAAGGGCTATTTTCAAGACCTCCACGCTAACAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

8.9

Weight (kDa)

11.1

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 5 cut(s) 8, 35, 59, 80, 182
AciI CCGC 6 cut(s) 45, 51, 93, 117, 126, 150
AcoI YGGCCR 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 1 cut(s) 233
AoxI GGCC 2 cut(s) 142, 207
ApeKI GCWGC 1 cut(s) 123
Asp718I GGTACC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 258
BanI GGYRCC 5 cut(s) 8, 35, 59, 80, 182
BarI GAAGNNNNNNTAC 2 cut(s) 208, 240
BbvI GCAGC 1 cut(s) 135
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 8 cut(s) 10, 37, 61, 82, 109, 184, 199, 210
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 145, 234
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 3 cut(s) 145, 166, 186
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 145, 234
BseNI ACTGG 3 cut(s) 145, 166, 186
BseRI GAGGAG 5 cut(s) 42, 69, 90, 114, 117
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 2 cut(s) 144, 209
BshNI GGYRCC 5 cut(s) 8, 35, 59, 80, 182
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 144, 209
BspACI CCGC 6 cut(s) 45, 51, 93, 117, 126, 150
BspANI GGCC 2 cut(s) 144, 209
BspLI GGNNCC 8 cut(s) 10, 37, 61, 82, 109, 184, 199, 210
BspT107I GGYRCC 5 cut(s) 8, 35, 59, 80, 182
BsrI ACTGG 3 cut(s) 145, 166, 186
BssECI CCNNGG 2 cut(s) 145, 234
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 123, 206
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 135
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 144, 209
BtgI CCRYGG 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 60
CspCI CAANNNNNGTGG 3 cut(s) 36, 100, 135
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 144, 200, 209, 264
CviKI_1 RGCY 4 cut(s) 144, 200, 209, 264
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
EciI GGCGGA 2 cut(s) 66, 165
Eco81I CCTNAGG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 1 cut(s) 205
FaiI YATR 2 cut(s) 41, 203
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 144, 209
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 206
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 205
KpnI GGTACC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 126, 147, 199, 220, 247
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 251
MboII GAAGA 2 cut(s) 168, 228
MspA1I CMGCKG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 123, 206
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 8 cut(s) 10, 37, 61, 82, 109, 184, 199, 210
PkrI GCNGC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 8 cut(s) 10, 37, 61, 82, 109, 184, 199, 210
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SatI GCNGC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 235
SetI ASST 8 cut(s) 10, 22, 34, 61, 82, 109, 243, 279
SfaNI GCATC 1 cut(s) 211
SsiI CCGC 6 cut(s) 45, 51, 93, 117, 126, 150
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 233
TaiI ACGT 1 cut(s) 243
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 218
XspI CTAG 1 cut(s) 213
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.