Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Forward (+)

59423641 .. 59426454

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGAGGTGCCAAAGAAGGTGGCGGAGGAGGTGCAAAGGGTAGTGGTGGTGGCGGCGGAGGAGGAGGTGTCAAAAGTGGCGGTGGAGGTGCCAAAACTGGCGGTGCAGGAGGAGGTTCCAAAGGTGGTGGCGGCGGAGCAGGTTCCAAAACTGGTGGTGGCGGAGGAAGAACTGGAGGGCAAGTGTCCTCGGGTGCCAGTTCTGGAGGAGCCATGAAGGCCCCTGGAAGAGATGCAACAATATCCAGGGACGTCTTTGAGAGTAACAATAAGGGCAATTTTGAAGACCTCCACGCCAGTAGCAACACCACCGTCGTAGTACAAGTCCTTCACCAAATCAATTGGATTCATGATGCAGAACGGATGGCAGTCCAATTCGAAGAGCGGTTTGATCATGCAAAAGTAGGAAAGCGCAGTTTGATTGTGCAAAAGGAGGAAAACAAAAAAGGTACTAGTAGCCACGAAATAGGTCGGAGTCCGATTGGGGCGTGCCATAGCTTTCCGGAAAGGGAATCGCATGCAGGAACAAAACTCGTTGCTATGCCACAACGTGCAGGTTTTTTTGGGTTTCCTCGGTCGTTTAGGGACTCAAAACTGCAATTTACTGTTTTTTATCAATTTTGGTTTCCTAGTTTTTTTTTTGTTTGTTTTTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

22.42

Weight (kDa)

9.8

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc36I	ACCTGC	2 cut(s)	131, 545
AccB1I	GGYRCC	3 cut(s)	8, 89, 194
AccBSI	CCGCTC	1 cut(s)	385
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	9 cut(s)	24, 54, 57, 81, 102, 132, 135, 162, 385
AcyI	GRCGYC	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	2 cut(s)	321, 451
AgsI	TTSAA	1 cut(s)	284
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	223, 245
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	190
BanI	GGYRCC	3 cut(s)	8, 89, 194
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbsI	GAAGAC	1 cut(s)	291
BccI	CCATC	1 cut(s)	358
BciT130I	CCWGG	2 cut(s)	225, 247
BclI	TGATCA	1 cut(s)	391
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	453, 630
BfuAI	ACCTGC	2 cut(s)	131, 545
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	55, 133
BlsI	GCNGC	2 cut(s)	56, 134
Bme1390I	CCNGG	2 cut(s)	225, 247
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	7 cut(s)	10, 91, 118, 145, 196, 211, 222
BmrFI	CCNGG	2 cut(s)	225, 247
BmsI	GCATC	2 cut(s)	223, 343
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	195, 225
Bpu14I	TTCGAA	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	189, 223, 246, 572
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 168, 198
Bse1I	ACTGG	5 cut(s)	103, 157, 178, 198, 297
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	225, 247
BseDI	CCNNGG	4 cut(s)	189, 223, 246, 572
BseGI	GGATG	1 cut(s)	369
BseNI	ACTGG	5 cut(s)	103, 157, 178, 198, 297
BseRI	GAGGAG	5 cut(s)	42, 75, 78, 126, 222
BsgI	GTGCAG	2 cut(s)	126, 573
Bsh1285I	CGRYCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	3 cut(s)	8, 89, 194
BsiEI	CGRYCG	1 cut(s)	578
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	2 cut(s)	263, 599
BsmFI	GGGAC	2 cut(s)	263, 599
BsnI	GGCC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	190
Bsp119I	TTCGAA	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	9 cut(s)	24, 54, 57, 81, 102, 132, 135, 162, 385
BspANI	GGCC	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	502
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	7 cut(s)	10, 91, 118, 145, 196, 211, 222
BspMI	ACCTGC	2 cut(s)	131, 545
BspQI	GCTCTTC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	3 cut(s)	8, 89, 194
BsrBI	CCGCTC	1 cut(s)	385
BsrI	ACTGG	5 cut(s)	103, 157, 178, 198, 297
BssECI	CCNNGG	4 cut(s)	189, 223, 246, 572
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	225, 247
Bst4CI	ACNGT	2 cut(s)	313, 607
Bst6I	CTCTTC	2 cut(s)	223, 375
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	490, 519
BstF5I	GGATG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	1 cut(s)	578
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	225, 247
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	223, 245
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	369
BveI	ACCTGC	2 cut(s)	131, 545
Cac8I	GCNNGC	2 cut(s)	490, 519
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	320, 450
CspCI	CAANNNNNGTGG	5 cut(s)	36, 109, 136, 144, 171
CviAII	CATG	4 cut(s)	214, 350, 395, 518
CviJI	RGCY	4 cut(s)	212, 221, 459, 498
CviKI_1	RGCY	4 cut(s)	212, 221, 459, 498
CviQI	GTAC	2 cut(s)	320, 450
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	223, 375
EarI	CTCTTC	2 cut(s)	223, 375
EciI	GGCGGA	4 cut(s)	39, 72, 150, 177
Eco88I	CYCGRG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	223, 245
FaeI	CATG	4 cut(s)	217, 353, 398, 521
FaiI	YATR	6 cut(s)	215, 351, 396, 495, 519, 542
FaqI	GGGAC	2 cut(s)	263, 599
FatI	CATG	4 cut(s)	213, 349, 394, 517
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	55, 133
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	2 cut(s)	55, 133
FspBI	CTAG	2 cut(s)	453, 630
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	2 cut(s)	55, 133
GsuI	CTGGAG	2 cut(s)	195, 225
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	503
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	217, 353, 398, 521
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	4 cut(s)	346, 475, 512, 587
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	474, 480
Hpy188III	TCNNGA	3 cut(s)	204, 350, 503
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	11, 211, 338
HpyCH4III	ACNGT	2 cut(s)	313, 607
HpyCH4IV	ACGT	2 cut(s)	252, 550
HpyCH4V	TGCA	9 cut(s)	35, 107, 236, 356, 398, 427, 521, 554, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	252, 550
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	217, 353, 398, 521
HspAI	GCGC	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	391
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	137, 209
LweI	GCATC	2 cut(s)	223, 343
MaeI	CTAG	2 cut(s)	453, 630
MaeII	ACGT	2 cut(s)	252, 550
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	1 cut(s)	391
MboII	GAAGA	4 cut(s)	180, 240, 296, 392
MfeI	CAATTG	1 cut(s)	340
MluCI	AATT	5 cut(s)	277, 340, 374, 599, 617
MlyI	GAGTC	2 cut(s)	484, 581
MmeI	TCCRAC	1 cut(s)	452
MroI	TCCGGA	1 cut(s)	502
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	225, 247
MunI	CAATTG	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	225, 247
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	217, 353, 398, 521
NlaIV	GGNNCC	7 cut(s)	10, 91, 118, 145, 196, 211, 222
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	521
PagI	TCATGA	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	346, 512
PkrI	GCNGC	2 cut(s)	56, 134
PleI	GAGTC	2 cut(s)	483, 581
PpsI	GAGTC	2 cut(s)	483, 581
Psp6I	CCWGG	2 cut(s)	223, 245
PspGI	CCWGG	2 cut(s)	223, 245
PspN4I	GGNNCC	7 cut(s)	10, 91, 118, 145, 196, 211, 222
PspPI	GGNCC	1 cut(s)	220
RsaI	GTAC	2 cut(s)	321, 451
RsaNI	GTAC	2 cut(s)	320, 450
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	2 cut(s)	55, 133
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	484, 581
ScrFI	CCNGG	2 cut(s)	225, 247
SfaNI	GCATC	2 cut(s)	223, 343
SfuI	TTCGAA	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	452
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	5 cut(s)	277, 340, 374, 599, 617
SsiI	CCGC	9 cut(s)	24, 54, 57, 81, 102, 132, 135, 162, 385
SspMI	CTAG	2 cut(s)	453, 630
StyD4I	CCNGG	2 cut(s)	223, 245
TaaI	ACNGT	2 cut(s)	313, 607
TaiI	ACGT	2 cut(s)	255, 553
TaqI	TCGA	1 cut(s)	378
TaqII	GACCGA	1 cut(s)	564
TasI	AATT	5 cut(s)	277, 340, 374, 599, 617
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	2 cut(s)	57, 135
TfiI	GAWTC	2 cut(s)	346, 512
TspDTI	ATGAA	2 cut(s)	230, 338
TspGWI	ACGGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	2 cut(s)	453, 630
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.