Rh4BG366600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002690
Physical Location & Seq
Forward (+)
52567696 .. 52568425
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG366600.1

Sequence Viewer

Length: 285 bp
ATGATGAACAACGAAATGGGAGCTAACGAAAGCAGGGAAAGCTCTGGACAGGATGAGAAAGGTGGTGCGTCGTCCGGTTACTCTTGGCTCTCCAAAGCAGCAATTGCTGCCGGCGCTATTGCGGGACTAGCTGCTGTGGCTTTGGGCGTAGCTGAACTCGTTTCGGGTTCAACGTCTTCAGAAGAGGAGAAGAAAACCATGAAGGCGCCCGGAAGAGACCAAAGGATTTACAGGAAGGACTTTGAGCGTGACCCTAAACAGTATTTCAAAGACTTGCGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.12

Weight (kDa)

7.95

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 205
AciI CCGC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 206
AgsI TTSAA 2 cut(s) 171, 268
AluBI AGCT 4 cut(s) 23, 42, 131, 152
AluI AGCT 4 cut(s) 23, 42, 131, 152
Alw26I GTCTC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 98, 107, 131
AspLEI GCGC 3 cut(s) 116, 208, 279
AsuC2I CCSGG 1 cut(s) 210
BanI GGYRCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 94, 110, 118
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 128
BfoI RGCGCY 2 cut(s) 117, 209
BisI GCNGC 3 cut(s) 99, 108, 132
BlsI GCNGC 3 cut(s) 100, 109, 133
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 110
BseGI GGATG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 94, 110, 118
BshNI GGYRCC 1 cut(s) 205
BsiSI CCGG 3 cut(s) 75, 111, 210
BslFI GGGAC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 210
BspACI CCGC 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssNI GRCGYC 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 177, 208
BstACI GRCGYC 1 cut(s) 206
BstAPI GCANNNNNTGC 2 cut(s) 104, 107
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 2 cut(s) 117, 209
BstHHI GCGC 3 cut(s) 116, 208, 279
BstMAI GTCTC 1 cut(s) 210
BstMWI GCNNNNNNNGC 6 cut(s) 39, 104, 107, 113, 128, 137
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 94, 110, 118
BstV2I GAAGAC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 3 cut(s) 116, 208, 279
Cfr10I RCCGGY 1 cut(s) 110
CseI GACGC 1 cut(s) 57
CviAII CATG 1 cut(s) 199
CviJI RGCY 6 cut(s) 23, 42, 88, 131, 140, 152
CviKI_1 RGCY 6 cut(s) 23, 42, 88, 131, 140, 152
DinI GGCGCC 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 177, 208
EarI CTCTTC 2 cut(s) 177, 208
Eco31I GGTCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 162
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
FaeI CATG 1 cut(s) 202
FaiI YATR 1 cut(s) 200
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 99, 108, 132
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 99, 108, 132
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 3 cut(s) 115, 207, 278
GluI GCNGC 3 cut(s) 99, 108, 132
HaeII RGCGCY 2 cut(s) 117, 209
HapII CCGG 3 cut(s) 75, 111, 210
HgaI GACGC 1 cut(s) 57
HhaI GCGC 3 cut(s) 116, 208, 279
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 3 cut(s) 114, 206, 277
HinP1I GCGC 3 cut(s) 114, 206, 277
HpaII CCGG 3 cut(s) 75, 111, 210
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 196, 229
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 104, 107, 113, 128, 137
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 3 cut(s) 114, 206, 277
KasI GGCGCC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 19, 30, 35, 88, 124, 217, 223
Lsp1109I GCAGC 3 cut(s) 94, 110, 118
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 77, 248
MboII GAAGA 4 cut(s) 168, 194, 202, 225
MfeI CAATTG 1 cut(s) 102
MluCI AATT 1 cut(s) 102
Mly113I GGCGCC 1 cut(s) 206
MnlI CCTC 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 3 cut(s) 75, 111, 210
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 6 cut(s) 39, 104, 107, 113, 128, 137
NaeI GCCGGC 1 cut(s) 112
NarI GGCGCC 1 cut(s) 206
NciI CCSGG 1 cut(s) 210
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 248
NsbI TGCGCA 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 100, 109, 133
PluTI GGCGCC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 207
SatI GCNGC 3 cut(s) 99, 108, 132
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 25, 44, 64, 133, 154, 176
SfoI GGCGCC 1 cut(s) 207
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 122
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 176
TasI AATT 1 cut(s) 102
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 3 cut(s) 98, 107, 131
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 20, 215
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.