Rh4DG213800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
41096443 .. 41096784
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG213800.1

Sequence Viewer

Length: 342 bp
ATGGGAGGTGCCAAGGGTGGCGGTGGCGGAGGAGGTGCCAAAAGTGGCCTTGGAAATGGAGGAGGAGGTGCCAAAAGTGGCCTTGGCAATGGAGGAGGTGGTGCCATAGGCGGTGGCGGAGGAGGTGCCAAAAGTGGTGGTGGAGCAGGAGGTTCCAAAGGTGGTGGCAGCGGAGGTGCCAAAACTGGCGGTGGCGGAGGAAGAACTGGAGGGCAAGTGTCCTTGGGTGCCAGTTCTGGTGGAGCCATGAAGGCCCCTGGAAGAGATGCTACAATATCTAGAGACGTCGTTGAGAGTAACCCCAAGGGCTATTTTCAAGACCTCCACGCTAATAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

9.62

Weight (kDa)

10.35

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccB1I GGYRCC 7 cut(s) 8, 35, 68, 101, 125, 176, 227
AciI CCGC 7 cut(s) 21, 27, 111, 117, 171, 189, 195
AcyI GRCGYC 1 cut(s) 285
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 276
AoxI GGCC 3 cut(s) 46, 79, 252
ApeKI GCWGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 253
BanI GGYRCC 7 cut(s) 8, 35, 68, 101, 125, 176, 227
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BbvI GCAGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 279
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 6 cut(s) 12, 49, 82, 222, 256, 303
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bse1I ACTGG 3 cut(s) 190, 211, 231
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 6 cut(s) 12, 49, 82, 222, 256, 303
BseMI GCAATG 1 cut(s) 94
BseNI ACTGG 3 cut(s) 190, 211, 231
BseRI GAGGAG 5 cut(s) 45, 75, 78, 108, 135
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 3 cut(s) 48, 81, 254
BshNI GGYRCC 7 cut(s) 8, 35, 68, 101, 125, 176, 227
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
BsnI GGCC 3 cut(s) 48, 81, 254
BspACI CCGC 7 cut(s) 21, 27, 111, 117, 171, 189, 195
BspANI GGCC 3 cut(s) 48, 81, 254
BspT107I GGYRCC 7 cut(s) 8, 35, 68, 101, 125, 176, 227
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 3 cut(s) 190, 211, 231
BssECI CCNNGG 6 cut(s) 12, 49, 82, 222, 256, 303
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 5 cut(s) 12, 49, 82, 222, 303
Bst2UI CCWGG 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 48, 81, 254
Cfr13I GGNCC 1 cut(s) 253
CspCI CAANNNNNGTGG 4 cut(s) 118, 145, 153, 180
CviAII CATG 1 cut(s) 247
CviJI RGCY 5 cut(s) 48, 81, 245, 254, 309
CviKI_1 RGCY 5 cut(s) 48, 81, 245, 254, 309
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
EciI GGCGGA 3 cut(s) 42, 132, 210
Eco130I CCWWGG 5 cut(s) 12, 49, 82, 222, 303
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 5 cut(s) 12, 49, 82, 222, 303
ErhI CCWWGG 5 cut(s) 12, 49, 82, 222, 303
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 1 cut(s) 250
FaiI YATR 2 cut(s) 107, 248
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 3 cut(s) 48, 81, 254
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 279, 317
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 1 cut(s) 250
LmnI GCTCC 2 cut(s) 143, 242
LpnPI CCDG 7 cut(s) 132, 171, 192, 222, 243, 244, 270
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 296
MboII GAAGA 2 cut(s) 213, 273
MspA1I CMGCKG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 250
PkrI GCNGC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 253
SatI GCNGC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 258
SfaNI GCATC 1 cut(s) 256
SsiI CCGC 7 cut(s) 21, 27, 111, 117, 171, 189, 195
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 5 cut(s) 12, 49, 82, 222, 303
TaiI ACGT 1 cut(s) 288
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 278
XspI CTAG 1 cut(s) 279
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.