Rh4AG215400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002690
Physical Location & Seq
Reverse (-)
51131924 .. 51147222
15299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG215400.1

Sequence Viewer

Length: 381 bp
ATGTATATATACAAAAGGGTACGTCTGGACTGGTTACAGAATCTGTATATAAGCACCACCGTCCGAGTACAAGTCCTTCACATAATCAATTGGATGACAAAATCACTTGCGGAAAACAAAACAAAAAAAGCAGAAAGGAAGAAATGGGAGGTAATGAAAGCAGGGAAAGCTCTCGACAGGACGAAGAAATTGAAAATGGTGCTACGTCGTCTGGTGAATCTGAGTTGTCCAAAGGAGCAGTTGTTGCCGGCGGTACGGTATTGCGGGACTTGTGGCTTTGGGCGTAGCTGGACTCCTTTCGGGTTCAACTTCTTCAGGAGGGCAGAGGCAAACCATGAAGGCGCCCGGAAGAGACCAGAGGATTTACAGGGACGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.93

Weight (kDa)

10.5

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AciI CCGC 3 cut(s) 110, 251, 264
AcuI CTGAAG 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 3 cut(s) 21, 69, 255
AgsI TTSAA 2 cut(s) 193, 307
AluBI AGCT 2 cut(s) 170, 288
AluI AGCT 2 cut(s) 170, 288
Alw26I GTCTC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 43
AspLEI GCGC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 226
BanI GGYRCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 346
BfoI RGCGCY 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 248, 346
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 346
BspACI CCGC 3 cut(s) 110, 251, 264
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 61, 258
Bst6I CTCTTC 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstMAI GTCTC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 167, 244
BstSCI CCNGG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 247
Csp6I GTAC 3 cut(s) 20, 68, 254
CviAII CATG 1 cut(s) 335
CviJI RGCY 3 cut(s) 170, 276, 288
CviKI_1 RGCY 3 cut(s) 170, 276, 288
CviQI GTAC 3 cut(s) 20, 68, 254
DdeI CTNAG 1 cut(s) 221
DinI GGCGCC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 298
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
FaeI CATG 1 cut(s) 338
FaiI YATR 7 cut(s) 6, 8, 10, 48, 50, 83, 336
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 257
FokI GGATG 1 cut(s) 106
GlaI GCGC 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 345
HapII CCGG 2 cut(s) 248, 346
HhaI GCGC 1 cut(s) 344
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 3 cut(s) 40, 217, 292
HpaII CCGG 2 cut(s) 248, 346
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 65, 222
Hpy188III TCNNGA 3 cut(s) 26, 173, 316
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 86, 332
HpyCH4III ACNGT 2 cut(s) 61, 258
HpyCH4IV ACGT 2 cut(s) 22, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 244
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 22, 205
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 342
KasI GGCGCC 1 cut(s) 341
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 235
MaeII ACGT 2 cut(s) 22, 205
MaeIII GTNAC 1 cut(s) 33
MboII GAAGA 4 cut(s) 151, 196, 304, 361
MfeI CAATTG 1 cut(s) 88
MluCI AATT 2 cut(s) 88, 188
Mly113I GGCGCC 1 cut(s) 342
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 4 cut(s) 142, 312, 319, 352
MroNI GCCGGC 1 cut(s) 247
MspI CCGG 2 cut(s) 248, 346
MspR9I CCNGG 1 cut(s) 346
MunI CAATTG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 167, 244
NaeI GCCGGC 1 cut(s) 249
NarI GGCGCC 1 cut(s) 342
NciI CCSGG 1 cut(s) 346
NgoMIV GCCGGC 1 cut(s) 247
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 343
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 40, 217
PleI GAGTC 1 cut(s) 286
PluTI GGCGCC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 3 cut(s) 21, 69, 255
RsaNI GTAC 3 cut(s) 20, 68, 254
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 346
SetI ASST 5 cut(s) 25, 153, 172, 208, 290
SfoI GGCGCC 1 cut(s) 343
Sse9I AATT 2 cut(s) 88, 188
SsiI CCGC 3 cut(s) 110, 251, 264
SspDI GGCGCC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 61, 258
TaiI ACGT 2 cut(s) 25, 208
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 88, 188
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 2 cut(s) 40, 217
TspDTI ATGAA 2 cut(s) 170, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.