MD11G1154600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002690
Physical Location & Seq
Forward (+)
14839560 .. 14839826
267 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1154600.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGAATCGAAACAAAGTTCGGAGAGCTCGAAGAAAAAGGAGGGAAGTGAGAACGAGTCGTCGTACAGCGTAGGTGCAATTGCTGCTAGTGCTGCTGCTGGAATTGGTCTACTGGCATGGGGTTTATCTGCACTTGTTTCATCAGCTGGTTCGGAGTCGGAGAGAAAGAAGAAAACAATGAAAGCTCCTGGAAAAGATGATATCATACAGAGGGAAGAGTTCGAACGTGATCCTAAAGGCTATTTCAGAGACTTGCGCAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.5

Weight (kDa)

8.92

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 257
AccI GTMKAC 1 cut(s) 109
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 27, 146, 185
AluI AGCT 3 cut(s) 27, 146, 185
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 3 cut(s) 83, 92, 95
AspLEI GCGC 1 cut(s) 258
AsuII TTCGAA 1 cut(s) 222
BanII GRGCYC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 70, 79, 82
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 87
BisI GCNGC 3 cut(s) 84, 93, 96
BlsI GCNGC 3 cut(s) 85, 94, 97
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 70, 79, 82
BsgI GTGCAG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 229
BspPI GGATC 1 cut(s) 224
BspT104I TTCGAA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 117
BssMI GATC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 222
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 83, 89, 92
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 70, 79, 82
CfoI GCGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 117
CviJI RGCY 4 cut(s) 27, 146, 185, 240
CviKI_1 RGCY 4 cut(s) 27, 146, 185, 240
CviQI GTAC 1 cut(s) 64
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 1 cut(s) 120
FaiI YATR 2 cut(s) 118, 206
FatI CATG 1 cut(s) 116
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 84, 93, 96
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 84, 93, 96
FspBI CTAG 1 cut(s) 87
FspI TGCGCA 1 cut(s) 257
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 84, 93, 96
HhaI GCGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 3 cut(s) 5, 56, 155
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 4 cut(s) 22, 154, 160, 248
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 77, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 89, 92
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 84, 98, 132, 174, 201
Lsp1109I GCAGC 3 cut(s) 70, 79, 82
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 3 cut(s) 43, 181, 227
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 3 cut(s) 78, 102, 262
MlyI GAGTC 2 cut(s) 65, 164
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 2 cut(s) 34, 204
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 83, 89, 92
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 120
NsbI TGCGCA 1 cut(s) 257
NspV TTCGAA 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 1 cut(s) 5
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 3 cut(s) 85, 94, 97
PleI GAGTC 2 cut(s) 64, 163
PpsI GAGTC 2 cut(s) 64, 163
Psp124BI GAGCTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 29
SatI GCNGC 3 cut(s) 84, 93, 96
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 2 cut(s) 65, 164
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 29
SetI ASST 5 cut(s) 29, 76, 148, 187, 229
SfuI TTCGAA 1 cut(s) 222
Sse9I AATT 3 cut(s) 78, 102, 262
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 8, 29, 222
TasI AATT 3 cut(s) 78, 102, 262
TfiI GAWTC 1 cut(s) 5
TseI GCWGC 3 cut(s) 83, 92, 95
TspDTI ATGAA 2 cut(s) 129, 194
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.