Rh4CG226800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002690
Physical Location & Seq
Reverse (-)
46381925 .. 46382348
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG226800.1

Sequence Viewer

Length: 330 bp
ATGAAAGCAGGGAAAGCTCTCGACAGGAAGAAGAAATTGAAAATGGTGCTGCGTCGTCTGGTGACTCTGAGTTATCCAAAGGAGCAGTTGCTACCGGCGGTATTGCGGGACTTTGTGGCTTTGGGCGTAGCTGGACTCCTTTCGGGTTCAACTTCTTCAGGAGGGCAGAGGAAAATCATGAAGGCGCCCGGAATAGACCAGAGGATTTACAGGGACGACTTTGGACGTGACACTGCTTCCTATTTCAAAGACTTCCGCAAGGATATGTGGGCATGTGGATCAACCCCACATTCAGTTGTAGTAGTTCGTGCTTCTTCTGTGTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

10.37

Isoelectric Point (pI)

25.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 3 cut(s) 98, 106, 256
AclWI GGATC 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 185
AgsI TTSAA 3 cut(s) 40, 150, 247
AjiI CACGTC 1 cut(s) 227
AluBI AGCT 2 cut(s) 17, 131
AluI AGCT 2 cut(s) 17, 131
AlwI GGATC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 73
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 36
BcnI CCSGG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 94
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 95, 189
BslFI GGGAC 2 cut(s) 122, 227
BsmFI GGGAC 2 cut(s) 122, 227
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 3 cut(s) 98, 106, 256
BspCNI CTCAG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 281
BstMBI GATC 1 cut(s) 278
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 177
CfoI GCGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 94
CseI GACGC 1 cut(s) 41
CviAII CATG 2 cut(s) 178, 273
CviJI RGCY 3 cut(s) 17, 119, 131
CviKI_1 RGCY 3 cut(s) 17, 119, 131
DdeI CTNAG 1 cut(s) 68
DinI GGCGCC 1 cut(s) 186
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaeI CATG 2 cut(s) 181, 276
FaiI YATR 3 cut(s) 179, 266, 274
FaqI GGGAC 2 cut(s) 122, 227
FatI CATG 2 cut(s) 177, 272
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
GlaI GCGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 2 cut(s) 95, 189
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 181, 276
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 2 cut(s) 64, 135
HpaII CCGG 2 cut(s) 95, 189
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 20, 159, 178
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 226
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 181, 276
HspAI GCGC 1 cut(s) 185
KasI GGCGCC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 8 cut(s) 10, 44, 108, 117, 144, 196, 202, 212
Lsp1109I GCAGC 1 cut(s) 36
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 61, 227
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 4 cut(s) 40, 43, 147, 306
MluCI AATT 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 2 cut(s) 58, 129
MnlI CCTC 3 cut(s) 155, 162, 195
MspI CCGG 2 cut(s) 95, 189
MspR9I CCNGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 14
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 1 cut(s) 189
NdeII GATC 1 cut(s) 278
NlaIII CATG 2 cut(s) 181, 276
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 61, 227
NspI RCATGY 1 cut(s) 276
PagI TCATGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 58, 129
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 2 cut(s) 58, 129
PspN4I GGNNCC 1 cut(s) 186
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 278
SchI GAGTC 2 cut(s) 58, 129
ScrFI CCNGG 1 cut(s) 189
SetI ASST 3 cut(s) 19, 133, 229
SfoI GGCGCC 1 cut(s) 186
Sse9I AATT 1 cut(s) 35
SsiI CCGC 3 cut(s) 98, 106, 256
SspDI GGCGCC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 35
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 61, 227
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 2 cut(s) 61, 227
TspDTI ATGAA 2 cut(s) 17, 194
TspRI CASTG 1 cut(s) 238
XceI RCATGY 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.