RLG00000029047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002690
Physical Location & Seq
Reverse (-)
31966276 .. 31966656
381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029047

Sequence Viewer

Length: 381 bp
ATGATGAACAACAAAACGGGAGCTAATGAAAGCAAGGAAAGCTCTGGACAGGGTGAGAATGGTGATGCGTCGTCATCCGGTTACTCTTGGTTCTCCAAAGCAGCAGTTGCTGCCAGCGCTATTGCGGGACTAGCTACTGTGGCTTTGGCGGTATCTGAACTCTTTTCGGGTTCAACTTCTTCAGAAGAGGAGAAGAAAACCATGAAGGCGCCGGAAGAGACGAGAGGATTTACAGGGAGGACTTTGAGCGTGACCCTAAATCCTATTTCTCAGGCTTGCGCAAAAAATAGGATATGTGGGATGGAAGCGTGTGGATCAACCCTGTGGAATGACGCAAAGAATAAACAAGTCGTCGTTCGTGCTTCTTCTGTGTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.11

Weight (kDa)

7.67

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 2 cut(s) 125, 149
AclWI GGATC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 209
AfeI AGCGCT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 174
AluBI AGCT 3 cut(s) 23, 42, 134
AluI AGCT 3 cut(s) 23, 42, 134
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 101, 110
AspLEI GCGC 3 cut(s) 119, 211, 281
AsuHPI GGTGA 2 cut(s) 65, 74
BanI GGYRCC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 97, 113
BccI CCATC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 120, 212
BisI GCNGC 2 cut(s) 102, 111
BlsI GCNGC 2 cut(s) 103, 112
BmiI GGNNCC 1 cut(s) 210
BmsI GCATC 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 77
BseGI GGATG 2 cut(s) 74, 306
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 97, 113
BshNI GGYRCC 1 cut(s) 208
BsiSI CCGG 2 cut(s) 78, 212
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 2 cut(s) 125, 149
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 208
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 180, 210
BstACI GRCGYC 1 cut(s) 209
BstAPI GCANNNNNTGC 2 cut(s) 107, 110
BstC8I GCNNGC 2 cut(s) 115, 277
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 74, 306
BstH2I RGCGCY 2 cut(s) 120, 212
BstHHI GCGC 3 cut(s) 119, 211, 281
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 6 cut(s) 39, 107, 110, 116, 131, 140
BstV1I GCAGC 2 cut(s) 97, 113
BtsCI GGATG 2 cut(s) 74, 306
Cac8I GCNNGC 2 cut(s) 115, 277
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 3 cut(s) 119, 211, 281
CseI GACGC 2 cut(s) 57, 341
CviAII CATG 2 cut(s) 202, 376
CviJI RGCY 5 cut(s) 23, 42, 134, 143, 275
CviKI_1 RGCY 5 cut(s) 23, 42, 134, 143, 275
DdeI CTNAG 1 cut(s) 270
DinI GGCGCC 1 cut(s) 210
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 180, 210
EarI CTCTTC 2 cut(s) 180, 210
Eco47III AGCGCT 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 165
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 2 cut(s) 205, 379
FaiI YATR 3 cut(s) 203, 295, 377
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 201, 375
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 102, 111
FokI GGATG 2 cut(s) 61, 313
Fsp4HI GCNGC 2 cut(s) 102, 111
FspBI CTAG 1 cut(s) 131
FspI TGCGCA 1 cut(s) 280
GlaI GCGC 3 cut(s) 118, 210, 280
GluI GCNGC 2 cut(s) 102, 111
HaeII RGCGCY 2 cut(s) 120, 212
HapII CCGG 2 cut(s) 78, 212
HgaI GACGC 2 cut(s) 57, 341
HhaI GCGC 3 cut(s) 119, 211, 281
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 2 cut(s) 205, 379
Hin6I GCGC 3 cut(s) 117, 209, 279
HinP1I GCGC 3 cut(s) 117, 209, 279
HpaII CCGG 2 cut(s) 78, 212
HphI GGTGA 2 cut(s) 65, 74
Hpy188I TCNGA 2 cut(s) 157, 184
Hpy188III TCNNGA 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 73, 356
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 107, 110, 116, 131, 140
HpyF3I CTNAG 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 2 cut(s) 205, 379
HspAI GCGC 3 cut(s) 117, 209, 279
KasI GGCGCC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 30, 35, 91, 127, 219, 225, 257, 335
Lsp1109I GCAGC 2 cut(s) 97, 113
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 80, 250
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 5 cut(s) 171, 197, 205, 227, 357
Mly113I GGCGCC 1 cut(s) 209
MnlI CCTC 3 cut(s) 181, 218, 231
MspI CCGG 2 cut(s) 78, 212
MwoI GCNNNNNNNGC 6 cut(s) 39, 107, 110, 116, 131, 140
NarI GGCGCC 1 cut(s) 209
NdeII GATC 1 cut(s) 314
NlaIII CATG 2 cut(s) 205, 379
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 280
PkrI GCNGC 2 cut(s) 103, 112
PluTI GGCGCC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 110
SatI GCNGC 2 cut(s) 102, 111
Sau3AI GATC 1 cut(s) 314
SetI ASST 3 cut(s) 25, 44, 136
SfaNI GCATC 1 cut(s) 55
SfoI GGCGCC 1 cut(s) 210
SsiI CCGC 2 cut(s) 125, 149
SspDI GGCGCC 1 cut(s) 208
SspMI CTAG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 139
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 101, 110
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 4 cut(s) 20, 42, 218, 364
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.