Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Forward (+)

22069829 .. 22072064

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTACAGTAACAGCTTACGTGTTTATCATCGACAAGACCAGTCTAAAGGGCCACGATCGTTTTCCACGCTTCTATCTCCCAATTCTCTAGCTAGATCTGCAGATAGAGAAGAACGATCCAGAGGTCAACACCCACTGTTCGCTGATATCAGGCTTATCCATCGCAATCAACACCAGCAGAACCTTGATTCTGTTTGCTCTGCAATTTCACATCTAGGTGCCAAAGGAGGTGGTGGAGGAGGAGGTGCTAAAAGTGGCGGTGGAGCAGGAGGTTCCAAAGGTGGTGGCAGCGGAGGTGCCAAAACTGGCGGTGGAGCGGGAGGTTCCAAAGGCGGTGGCAGCGGAGGTGCCAAAACTGGCGGTGGACCAGGAGGTTCCAAAGGCAGTGGCAGCGGAGGTGCCAAAACTGGCGGTGGCGGAGGAAGAACTGGAGGGCAAGTGTCCTCGGGTGCCGGTTCTGGTGGCGCCATGAAGGCCCCTGGAAGAGATACTACAATATCCAGGGACGTCTTTGAGAGTAACCCTAAGGGCTATTTTCAAGATCTCCACGCCGACAGCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

18.18

Weight (kDa)

10.44

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	510
AccB1I	GGYRCC	6 cut(s)	218, 296, 347, 398, 449, 464
AccBSI	CCGCTC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	111
AcyI	GRCGYC	2 cut(s)	465, 507
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	539
AjnI	CCWGG	3 cut(s)	367, 478, 500
AluBI	AGCT	2 cut(s)	15, 92
AluI	AGCT	2 cut(s)	15, 92
AlwI	GGATC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	2 cut(s)	50, 474
ApeKI	GCWGC	3 cut(s)	288, 339, 390
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	50, 365, 475
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	525
BanI	GGYRCC	6 cut(s)	218, 296, 347, 398, 449, 464
BarI	GAAGNNNNNNTAC	2 cut(s)	475, 507
BbvI	GCAGC	3 cut(s)	300, 351, 402
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	3 cut(s)	369, 480, 502
BfaI	CTAG	3 cut(s)	89, 93, 215
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	468
BglI	GCCNNNNNGGC	1 cut(s)	473
BglII	AGATCT	2 cut(s)	95, 541
BisI	GCNGC	3 cut(s)	289, 340, 391
BlsI	GCNGC	3 cut(s)	290, 341, 392
Bme1390I	CCNGG	3 cut(s)	369, 480, 502
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	50, 365, 475
BmrFI	CCNGG	3 cut(s)	369, 480, 502
BpmI	CTGGAG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	465, 507
BsaJI	CCNNGG	3 cut(s)	444, 478, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	5 cut(s)	40, 310, 361, 412, 433
Bse21I	CCTNAGG	1 cut(s)	525
BseBI	CCWGG	3 cut(s)	369, 480, 502
BseDI	CCNNGG	3 cut(s)	444, 478, 501
BseNI	ACTGG	5 cut(s)	40, 310, 361, 412, 433
BseRI	GAGGAG	2 cut(s)	252, 255
BseXI	GCAGC	3 cut(s)	300, 351, 402
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	52, 476
BshNI	GGYRCC	6 cut(s)	218, 296, 347, 398, 449, 464
BsiEI	CGRYCG	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	2 cut(s)	52, 476
BsoBI	CYCGRG	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	56, 95, 116, 541
BspANI	GGCC	2 cut(s)	52, 476
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	6 cut(s)	218, 296, 347, 398, 449, 464
BsrBI	CCGCTC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	40, 310, 361, 412, 433
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	444, 478, 501
BssMI	GATC	4 cut(s)	56, 95, 116, 541
BssNI	GRCGYC	2 cut(s)	465, 507
Bst2UI	CCWGG	3 cut(s)	369, 480, 502
Bst4CI	ACNGT	2 cut(s)	8, 138
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	2 cut(s)	465, 507
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	4 cut(s)	59, 98, 119, 544
BstMBI	GATC	4 cut(s)	56, 95, 116, 541
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 339, 390, 473
BstNI	CCWGG	3 cut(s)	369, 480, 502
BstSCI	CCNGG	3 cut(s)	367, 478, 500
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	300, 351, 402
BstX2I	RGATCY	2 cut(s)	95, 541
BstYI	RGATCY	2 cut(s)	95, 541
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	52, 476
BtgZI	GCGATG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	134, 391
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	50, 365, 475
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	8 cut(s)	211, 246, 265, 300, 316, 351, 367, 402
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	6 cut(s)	15, 52, 92, 154, 476, 531
CviKI_1	RGCY	6 cut(s)	15, 52, 92, 154, 476, 531
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	525
DinI	GGCGCC	1 cut(s)	466
DpnI	GATC	4 cut(s)	58, 97, 118, 543
DpnII	GATC	4 cut(s)	56, 95, 116, 541
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EciI	GGCGGA	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRII	CCWGG	3 cut(s)	367, 478, 500
EcoRV	GATATC	1 cut(s)	148
EgeI	GGCGCC	1 cut(s)	466
EheI	GGCGCC	1 cut(s)	466
FaeI	CATG	1 cut(s)	472
FaiI	YATR	1 cut(s)	470
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	1 cut(s)	468
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	289, 340, 391
Fsp4HI	GCNGC	3 cut(s)	289, 340, 391
FspBI	CTAG	3 cut(s)	89, 93, 215
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	3 cut(s)	289, 340, 391
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	52, 476
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	2 cut(s)	465, 507
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	453
Hpy166II	GTNNAC	2 cut(s)	128, 365
Hpy188III	TCNNGA	2 cut(s)	120, 539
Hpy8I	GTNNAC	2 cut(s)	128, 365
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	2 cut(s)	8, 138
HpyCH4IV	ACGT	2 cut(s)	19, 507
HpyCH4V	TGCA	2 cut(s)	101, 203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 339, 390, 473
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	19, 507
Hsp92I	GRCGYC	2 cut(s)	465, 507
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	1 cut(s)	465
KasI	GGCGCC	1 cut(s)	464
Kzo9I	GATC	4 cut(s)	56, 95, 116, 541
LmnI	GCTCC	2 cut(s)	263, 314
Lsp1109I	GCAGC	3 cut(s)	300, 351, 402
MaeI	CTAG	3 cut(s)	89, 93, 215
MaeII	ACGT	2 cut(s)	19, 507
MaeIII	GTNAC	2 cut(s)	8, 518
MalI	GATC	4 cut(s)	58, 97, 118, 543
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	4 cut(s)	56, 95, 116, 541
MboII	GAAGA	3 cut(s)	122, 435, 495
MflI	RGATCY	2 cut(s)	95, 541
MluCI	AATT	2 cut(s)	82, 204
Mly113I	GGCGCC	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	3 cut(s)	291, 342, 393
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	3 cut(s)	369, 480, 502
MvaI	CCWGG	3 cut(s)	369, 480, 502
MwoI	GCNNNNNNNGC	4 cut(s)	98, 339, 390, 473
NarI	GGCGCC	1 cut(s)	465
NdeII	GATC	4 cut(s)	56, 95, 116, 541
NlaIII	CATG	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	290, 341, 392
Ple19I	CGATCG	1 cut(s)	59
PluTI	GGCGCC	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	20
Psp6I	CCWGG	3 cut(s)	367, 478, 500
PspGI	CCWGG	3 cut(s)	367, 478, 500
PspPI	GGNCC	3 cut(s)	50, 365, 475
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	95, 541
PvuI	CGATCG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	3 cut(s)	289, 340, 391
Sau3AI	GATC	4 cut(s)	56, 95, 116, 541
Sau96I	GGNCC	3 cut(s)	50, 365, 475
ScrFI	CCNGG	3 cut(s)	369, 480, 502
SfcI	CTRYAG	1 cut(s)	99
SfoI	GGCGCC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	82, 204
SspDI	GGCGCC	1 cut(s)	464
SspMI	CTAG	3 cut(s)	89, 93, 215
StyD4I	CCNGG	3 cut(s)	367, 478, 500
TaaI	ACNGT	2 cut(s)	8, 138
TaiI	ACGT	2 cut(s)	22, 510
TaqI	TCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	82, 204
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	2 cut(s)	141, 391
TseI	GCWGC	3 cut(s)	288, 339, 390
TspDTI	ATGAA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	141, 391
VpaK11BI	GGWCC	1 cut(s)	365
XspI	CTAG	3 cut(s)	89, 93, 215
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.