Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Forward (+)

202245 .. 202895

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgggaggtgcaaaaggaggtgccaagggtggcggtagcggaggaggtgctaaaagtggccttggcagtggaggaggtagtgccataggcggtggcggaggaggtaccaaaagtggtggaggaggtgccaaaagtggcggtggagcaggaggttccaaaggcggtggcagcggcggaggtgccaaaattggcggtggagcaggaggttccaaaggcagtggcagcggagatgccaaaactggcggtggaggaggtagtgccataggcggtggcggaggaggtaccaaaagtggtggaggaggtgccaaaagtggcggtggagcaggaggttccaaaggcggtggcagcggcggaggtgccaaaattggcggtggagcaggaggttccaaaggcagtggcagcggagatgccaaaactggcggtggcggaggaggtgccaaaattggcggtggagcaggaggttccaaaggcagtggcagcggagatgccaaaactggcggtggcggaggaagaactggagggcaagtgtcctcgagtgccagttctggtggagtcatgaaggcccctggaagagatgctacaatatccaggggcgtctttgagagtaaccctaagggctattttcaagacctccacgctgacagcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

17.44

Weight (kDa)

10.42

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	104, 281
AccB1I	GGYRCC	8 cut(s)	20, 104, 125, 179, 281, 302, 356, 434
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	2 cut(s)	106, 283
AgsI	TTSAA	1 cut(s)	626
AjnI	CCWGG	2 cut(s)	565, 587
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	2 cut(s)	58, 561
ApeKI	GCWGC	5 cut(s)	168, 222, 345, 399, 477
Asp718I	GGTACC	2 cut(s)	104, 281
AspS9I	GGNCC	1 cut(s)	562
AvaI	CYCGRG	1 cut(s)	532
AxyI	CCTNAGG	1 cut(s)	612
BanI	GGYRCC	8 cut(s)	20, 104, 125, 179, 281, 302, 356, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BbvI	GCAGC	5 cut(s)	180, 234, 357, 411, 489
BciT130I	CCWGG	2 cut(s)	567, 589
BisI	GCNGC	7 cut(s)	169, 172, 223, 346, 349, 400, 478
BlsI	GCNGC	7 cut(s)	170, 173, 224, 347, 350, 401, 479
Bme1390I	CCNGG	2 cut(s)	567, 589
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	562
BmrFI	CCNGG	2 cut(s)	567, 589
BmsI	GCATC	4 cut(s)	220, 397, 475, 565
BpmI	CTGGAG	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	24, 61, 565, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bse1I	ACTGG	5 cut(s)	244, 421, 499, 520, 540
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	567, 589
BseDI	CCNNGG	4 cut(s)	24, 61, 565, 588
BseNI	ACTGG	5 cut(s)	244, 421, 499, 520, 540
BseRI	GAGGAG	8 cut(s)	57, 87, 114, 135, 264, 291, 312, 444
BseXI	GCAGC	5 cut(s)	180, 234, 357, 411, 489
BshFI	GGCC	2 cut(s)	60, 563
BshNI	GGYRCC	8 cut(s)	20, 104, 125, 179, 281, 302, 356, 434
BsiHKCI	CYCGRG	1 cut(s)	532
BsnI	GGCC	2 cut(s)	60, 563
BsoBI	CYCGRG	1 cut(s)	532
BspANI	GGCC	2 cut(s)	60, 563
BspHI	TCATGA	1 cut(s)	555
BspT107I	GGYRCC	8 cut(s)	20, 104, 125, 179, 281, 302, 356, 434
BsrI	ACTGG	5 cut(s)	244, 421, 499, 520, 540
BssECI	CCNNGG	4 cut(s)	24, 61, 565, 588
BssNI	GRCGYC	1 cut(s)	594
BssT1I	CCWWGG	2 cut(s)	24, 61
Bst2UI	CCWGG	2 cut(s)	567, 589
Bst6I	CTCTTC	1 cut(s)	565
BstACI	GRCGYC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 222, 345, 399, 477
BstNI	CCWGG	2 cut(s)	567, 589
BstSCI	CCNGG	2 cut(s)	565, 587
BstV1I	GCAGC	5 cut(s)	180, 234, 357, 411, 489
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	60, 563
BtsI	GCAGTG	4 cut(s)	73, 223, 400, 478
BtsIMutI	CAGTG	4 cut(s)	73, 223, 400, 478
CciI	TCATGA	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	105, 282
CviAII	CATG	1 cut(s)	556
CviJI	RGCY	3 cut(s)	60, 563, 618
CviKI_1	RGCY	3 cut(s)	60, 563, 618
CviQI	GTAC	2 cut(s)	105, 282
DdeI	CTNAG	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
EciI	GGCGGA	6 cut(s)	111, 189, 288, 366, 441, 519
Eco130I	CCWWGG	2 cut(s)	24, 61
Eco81I	CCTNAGG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	565, 587
EcoT14I	CCWWGG	2 cut(s)	24, 61
ErhI	CCWWGG	2 cut(s)	24, 61
FaeI	CATG	1 cut(s)	559
FaiI	YATR	3 cut(s)	86, 263, 557
FatI	CATG	1 cut(s)	555
Fnu4HI	GCNGC	7 cut(s)	169, 172, 223, 346, 349, 400, 478
Fsp4HI	GCNGC	7 cut(s)	169, 172, 223, 346, 349, 400, 478
GluI	GCNGC	7 cut(s)	169, 172, 223, 346, 349, 400, 478
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	60, 563
HgaI	GACGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	1 cut(s)	559
HinfI	GANTC	1 cut(s)	552
Hpy188III	TCNNGA	2 cut(s)	556, 626
HpyAV	CCTTC	1 cut(s)	553
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 222, 345, 399, 477
HpyF3I	CTNAG	1 cut(s)	612
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	1 cut(s)	559
KpnI	GGTACC	2 cut(s)	108, 285
LmnI	GCTCC	5 cut(s)	143, 197, 320, 374, 452
Lsp1109I	GCAGC	5 cut(s)	180, 234, 357, 411, 489
LweI	GCATC	4 cut(s)	220, 397, 475, 565
MaeIII	GTNAC	1 cut(s)	605
MboII	GAAGA	2 cut(s)	522, 582
MluCI	AATT	3 cut(s)	186, 363, 441
MlyI	GAGTC	1 cut(s)	561
MspA1I	CMGCKG	5 cut(s)	171, 225, 348, 402, 480
MspR9I	CCNGG	2 cut(s)	567, 589
MvaI	CCWGG	2 cut(s)	567, 589
MwoI	GCNNNNNNNGC	5 cut(s)	168, 222, 345, 399, 477
NlaIII	CATG	1 cut(s)	559
PaeR7I	CTCGAG	1 cut(s)	532
PagI	TCATGA	1 cut(s)	555
PkrI	GCNGC	7 cut(s)	170, 173, 224, 347, 350, 401, 479
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	565, 587
PspGI	CCWGG	2 cut(s)	565, 587
PspPI	GGNCC	1 cut(s)	562
PspXI	VCTCGAGB	1 cut(s)	532
RsaI	GTAC	2 cut(s)	106, 283
RsaNI	GTAC	2 cut(s)	105, 282
SatI	GCNGC	7 cut(s)	169, 172, 223, 346, 349, 400, 478
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	567, 589
SfaNI	GCATC	4 cut(s)	220, 397, 475, 565
Sfr274I	CTCGAG	1 cut(s)	532
SlaI	CTCGAG	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	3 cut(s)	186, 363, 441
StyD4I	CCNGG	2 cut(s)	565, 587
StyI	CCWWGG	2 cut(s)	24, 61
TaqI	TCGA	1 cut(s)	533
TasI	AATT	3 cut(s)	186, 363, 441
TauI	GCSGC	2 cut(s)	174, 351
TscAI	CASTG	4 cut(s)	73, 223, 400, 478
TseI	GCWGC	5 cut(s)	168, 222, 345, 399, 477
TspDTI	ATGAA	1 cut(s)	572
TspRI	CASTG	4 cut(s)	73, 223, 400, 478
XhoI	CTCGAG	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.