Rroxscaffold_5G00361760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002690
Physical Location & Seq
Reverse (-)
42487911 .. 42489915
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361760.1

Sequence Viewer

Length: 618 bp
ATGGGAGGTGCCAAAGGAGGTGGTGGAGGAGGTGCCAAGGGTGGCGGTAGCGGAGGGGGAGGTGCCAAAGGAGGTGGTGGAGGAGGTACCAAGGGTGGCAGTAGCGGAGGATGTGCTAAAAGTGGCCTTGGCAGTGGAGGAGGTGGTGCCATAGGCGGTGGCGGCGGAGGTACCAAAAGTGGTGGAGGAGGTGCCAAAAGTGGCGGTGGAGCAGGAGGTTCCAAAGGCGGTGGCAGCGGAGGTGCCAAAACTGGCGGTGGAGCAGGATGTTCCAAAGGCGGTGGCAGCGGAGGTGCCAAAACTGGCGGTGGCGGAGGAAGAACTGGAGGGCAAGTGTCCTCGGGTGCCAGTTCTGGTGGAGTCATGAAGGCCCCTGGAAGAGATGCTACAATATCCAGGGACGTCTTTGAGAGCAACCCTAAGGGCTATTTTCAAGACCTCCACGCTGACAGCAACTGGACTCCTTTCGGGTTCAACTTCTTCAGAGGACAGAGGAAAACCATGAAGGCCCCCGGAAGAGACCAGAGGATTTACATGGATGACTTTGAGTGTGACGCTACTTCCTACTTTAAAGATTTGAGGAAGGATATGTGGGCATGTGGATCAACCCCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

18.85

Weight (kDa)

9.86

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
Acc65I GGTACC 2 cut(s) 86, 170
AclWI GGATC 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 466
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 2 cut(s) 88, 172
AgsI TTSAA 2 cut(s) 434, 475
AjnI CCWGG 2 cut(s) 373, 395
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 1 cut(s) 610
AlwNI CAGNNNCTG 1 cut(s) 456
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 3 cut(s) 124, 369, 507
ApeKI GCWGC 2 cut(s) 234, 285
Asp718I GGTACC 2 cut(s) 86, 170
AspS9I GGNCC 2 cut(s) 370, 508
AsuC2I CCSGG 1 cut(s) 513
AvaI CYCGRG 1 cut(s) 340
AxyI CCTNAGG 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BbvI GCAGC 2 cut(s) 246, 297
BciT130I CCWGG 2 cut(s) 375, 397
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 513
BisI GCNGC 3 cut(s) 163, 235, 286
BlsI GCNGC 3 cut(s) 164, 236, 287
Bme1390I CCNGG 3 cut(s) 375, 397, 513
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 370, 508
BmrFI CCNGG 3 cut(s) 375, 397, 513
BmsI GCATC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 7 cut(s) 36, 90, 127, 339, 373, 396, 511
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bse1I ACTGG 5 cut(s) 256, 307, 328, 348, 461
Bse21I CCTNAGG 1 cut(s) 420
BseBI CCWGG 2 cut(s) 375, 397
BseDI CCNNGG 7 cut(s) 36, 90, 127, 339, 373, 396, 511
BseGI GGATG 3 cut(s) 116, 272, 544
BseNI ACTGG 5 cut(s) 256, 307, 328, 348, 461
BseRI GAGGAG 4 cut(s) 42, 96, 153, 201
BseXI GCAGC 2 cut(s) 246, 297
BshFI GGCC 3 cut(s) 126, 371, 509
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 3 cut(s) 126, 371, 509
Bso31I GGTCTC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 340
Bsp143I GATC 1 cut(s) 602
BspANI GGCC 3 cut(s) 126, 371, 509
BspHI TCATGA 1 cut(s) 363
BspPI GGATC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 513
BsrI ACTGG 5 cut(s) 256, 307, 328, 348, 461
BssECI CCNNGG 7 cut(s) 36, 90, 127, 339, 373, 396, 511
BssMI GATC 1 cut(s) 602
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 3 cut(s) 36, 90, 127
Bst2UI CCWGG 2 cut(s) 375, 397
Bst6I CTCTTC 2 cut(s) 373, 511
BstACI GRCGYC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 116, 272, 544
BstKTI GATC 1 cut(s) 605
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 1 cut(s) 602
BstMWI GCNNNNNNNGC 3 cut(s) 162, 234, 285
BstNI CCWGG 2 cut(s) 375, 397
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 3 cut(s) 373, 395, 511
BstV1I GCAGC 2 cut(s) 246, 297
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 3 cut(s) 126, 371, 509
BtsCI GGATG 3 cut(s) 116, 272, 544
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 456
CciI TCATGA 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 370, 508
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 87, 171
CspCI CAANNNNNGTGG 9 cut(s) 36, 55, 90, 163, 198, 211, 246, 262, 297
CviAII CATG 4 cut(s) 364, 502, 535, 597
CviJI RGCY 4 cut(s) 126, 371, 426, 509
CviKI_1 RGCY 4 cut(s) 126, 371, 426, 509
CviQI GTAC 2 cut(s) 87, 171
DdeI CTNAG 1 cut(s) 420
DpnI GATC 1 cut(s) 604
DpnII GATC 1 cut(s) 602
DraI TTTAAA 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 373, 511
EarI CTCTTC 2 cut(s) 373, 511
EciI GGCGGA 2 cut(s) 180, 327
Eco130I CCWWGG 3 cut(s) 36, 90, 127
Eco31I GGTCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 466
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 340
EcoO109I RGGNCCY 2 cut(s) 370, 508
EcoRII CCWGG 2 cut(s) 373, 395
EcoT14I CCWWGG 3 cut(s) 36, 90, 127
ErhI CCWWGG 3 cut(s) 36, 90, 127
FaeI CATG 4 cut(s) 367, 505, 538, 600
FaiI YATR 6 cut(s) 152, 365, 503, 536, 590, 598
FaqI GGGAC 1 cut(s) 413
FatI CATG 4 cut(s) 363, 501, 534, 596
Fnu4HI GCNGC 3 cut(s) 163, 235, 286
FokI GGATG 3 cut(s) 123, 279, 551
Fsp4HI GCNGC 3 cut(s) 163, 235, 286
GluI GCNGC 3 cut(s) 163, 235, 286
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 3 cut(s) 126, 371, 509
HapII CCGG 1 cut(s) 513
HgaI GACGC 1 cut(s) 563
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 4 cut(s) 367, 505, 538, 600
HinfI GANTC 2 cut(s) 360, 460
HpaII CCGG 1 cut(s) 513
Hpy188I TCNGA 1 cut(s) 485
Hpy188III TCNNGA 2 cut(s) 364, 434
HpyAV CCTTC 3 cut(s) 361, 499, 577
HpyCH4IV ACGT 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 234, 285
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 402
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 4 cut(s) 367, 505, 538, 600
KpnI GGTACC 2 cut(s) 90, 174
Kzo9I GATC 1 cut(s) 602
LmnI GCTCC 2 cut(s) 209, 260
Lsp1109I GCAGC 2 cut(s) 246, 297
LweI GCATC 1 cut(s) 373
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 551
MalI GATC 1 cut(s) 604
MboI GATC 1 cut(s) 602
MboII GAAGA 4 cut(s) 330, 390, 472, 528
MlyI GAGTC 2 cut(s) 369, 454
MseI TTAA 2 cut(s) 570, 616
MspA1I CMGCKG 2 cut(s) 237, 288
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 3 cut(s) 375, 397, 513
MvaI CCWGG 2 cut(s) 375, 397
MwoI GCNNNNNNNGC 3 cut(s) 162, 234, 285
NciI CCSGG 1 cut(s) 513
NdeII GATC 1 cut(s) 602
NlaIII CATG 4 cut(s) 367, 505, 538, 600
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 1 cut(s) 600
PagI TCATGA 1 cut(s) 363
PkrI GCNGC 3 cut(s) 164, 236, 287
PleI GAGTC 2 cut(s) 368, 454
PpsI GAGTC 2 cut(s) 368, 454
Psp6I CCWGG 2 cut(s) 373, 395
PspGI CCWGG 2 cut(s) 373, 395
PspPI GGNCC 2 cut(s) 370, 508
PstNI CAGNNNCTG 1 cut(s) 456
RsaI GTAC 2 cut(s) 88, 172
RsaNI GTAC 2 cut(s) 87, 171
SaqAI TTAA 2 cut(s) 570, 616
SatI GCNGC 3 cut(s) 163, 235, 286
Sau3AI GATC 1 cut(s) 602
Sau96I GGNCC 2 cut(s) 370, 508
SchI GAGTC 2 cut(s) 369, 454
ScrFI CCNGG 3 cut(s) 375, 397, 513
SfaNI GCATC 1 cut(s) 373
StyD4I CCNGG 3 cut(s) 373, 395, 511
StyI CCWWGG 3 cut(s) 36, 90, 127
TaiI ACGT 1 cut(s) 405
TauI GCSGC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 570, 616
Tru9I TTAA 2 cut(s) 570, 616
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 2 cut(s) 234, 285
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 2 cut(s) 380, 518
TspRI CASTG 1 cut(s) 139
XceI RCATGY 1 cut(s) 600
ZraI GACGTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.