Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Forward (+)

66646603 .. 66648436

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGATATGCATCACTCCAACCCCAAGATGCCTACAAAGTTCATGATGTGTTGTGGGAAAGCTCTGGACAGGATGAGAAAGGTGGTGCGTCGTCCGGTTACACTTGGCTCTCCAAAGCAGCAATTGCTGCCGGCGCTATTGCGGGACTAGCTGTTGTGGCTTTGGGCGTAGCTGAACTCGTTTCGGGTTCAACGTCTTCAGAAGAGGAGAAGAAAACCATGAAGGCGCCCGGAAGAGACCAGAGGATTTACAGGGAGGACTTTGAGCGTGACCCTAAACGGTATTTCAAAGACTTGCGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.03

Weight (kDa)

6.58

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	192, 289
AluBI	AGCT	3 cut(s)	63, 152, 173
AluI	AGCT	3 cut(s)	63, 152, 173
Alw26I	GTCTC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	119, 128
AspLEI	GCGC	3 cut(s)	137, 229, 300
AsuC2I	CCSGG	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	115, 131
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	2 cut(s)	138, 230
BisI	GCNGC	2 cut(s)	120, 129
BlsI	GCNGC	2 cut(s)	121, 130
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	19, 20
BpiI	GAAGAC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	10
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	115, 131
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	96, 132, 231
BslFI	GGGAC	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	198, 229
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	2 cut(s)	125, 128
BstC8I	GCNNGC	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	79
BstH2I	RGCGCY	2 cut(s)	138, 230
BstHHI	GCGC	3 cut(s)	137, 229, 300
BstMAI	GTCTC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 128, 134, 149, 158
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	115, 131
BstV2I	GAAGAC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	3 cut(s)	137, 229, 300
Cfr10I	RCCGGY	1 cut(s)	131
CseI	GACGC	1 cut(s)	78
CviAII	CATG	2 cut(s)	44, 220
CviJI	RGCY	5 cut(s)	63, 109, 152, 161, 173
CviKI_1	RGCY	5 cut(s)	63, 109, 152, 161, 173
DinI	GGCGCC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	198, 229
EarI	CTCTTC	2 cut(s)	198, 229
Eco31I	GGTCTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
FaeI	CATG	2 cut(s)	47, 223
FaiI	YATR	3 cut(s)	9, 45, 221
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	2 cut(s)	43, 219
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	120, 129
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	120, 129
FspBI	CTAG	1 cut(s)	149
FspI	TGCGCA	1 cut(s)	299
GlaI	GCGC	3 cut(s)	136, 228, 299
GluI	GCNGC	2 cut(s)	120, 129
HaeII	RGCGCY	2 cut(s)	138, 230
HapII	CCGG	3 cut(s)	96, 132, 231
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	3 cut(s)	137, 229, 300
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	47, 223
Hin6I	GCGC	3 cut(s)	135, 227, 298
HinP1I	GCGC	3 cut(s)	135, 227, 298
HpaII	CCGG	3 cut(s)	96, 132, 231
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	44, 66
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 128, 134, 149, 158
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	47, 223
HspAI	GCGC	3 cut(s)	135, 227, 298
KasI	GGCGCC	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	51, 56, 109, 145, 238, 244, 254
Lsp1109I	GCAGC	2 cut(s)	115, 131
LweI	GCATC	2 cut(s)	19, 20
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	98, 269
MboII	GAAGA	4 cut(s)	189, 215, 223, 246
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	199, 237, 250
Mph1103I	ATGCAT	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	131
MspI	CCGG	3 cut(s)	96, 132, 231
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	123
MwoI	GCNNNNNNNGC	5 cut(s)	125, 128, 134, 149, 158
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	231
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	47, 223
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	13
PagI	TCATGA	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	121, 130
PluTI	GGCGCC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	120, 129
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	5 cut(s)	65, 85, 154, 175, 197
SfaNI	GCATC	2 cut(s)	19, 20
SfoI	GGCGCC	1 cut(s)	228
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	143
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	197
TasI	AATT	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	119, 128
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	32, 236
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.