Rroxscaffold_5G00361750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002690
Physical Location & Seq
Reverse (-)
42480467 .. 42481085
619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361750.1

Sequence Viewer

Length: 285 bp
ATGCGAGTTGCCAAATCAAATTGGATTCACTTGAAAAGAAAAAAATTGACGAAGAAGGAAATGGGAGCTAATGAAAGCAGGGAAAGCTCTAGACAGGGTAACCCTTGGTTCATTGCGGGACTAGCTGCTGTGGCTTTGGGCGCAGTTAAACTCGCTTTGGATTCAACTTCTTCTGAAGTGCAGAGGAAAACCATGAAGGAGCCCGGGGGAAACGGGAGGATTTACAGGGATGATTTTGAGCGTAACCCTAAACAATATTTCCAAGACAAGCGCGCAGGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.67

Weight (kDa)

10.37

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 195
AgsI TTSAA 2 cut(s) 34, 165
AluBI AGCT 3 cut(s) 68, 87, 125
AluI AGCT 3 cut(s) 68, 87, 125
Ama87I CYCGRG 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 3 cut(s) 143, 273, 275
AsuC2I CCSGG 2 cut(s) 204, 205
AvaI CYCGRG 1 cut(s) 203
BanII GRGCYC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 112
BcnI CCSGG 2 cut(s) 204, 205
BfaI CTAG 2 cut(s) 90, 122
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 2 cut(s) 204, 205
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 204, 205
BpuMI CCSGG 2 cut(s) 204, 205
BsaJI CCNNGG 3 cut(s) 104, 203, 204
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 104, 203, 204
BseGI GGATG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 111
BsePI GCGCGC 1 cut(s) 271
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 204
BspACI CCGC 1 cut(s) 116
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 104, 203, 204
BssHII GCGCGC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 273, 277
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 3 cut(s) 143, 273, 275
BstMWI GCNNNNNNNGC 4 cut(s) 84, 122, 131, 140
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 202, 203
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 273, 277
CfoI GCGC 3 cut(s) 143, 273, 275
Cfr9I CCCGGG 1 cut(s) 203
CviAII CATG 1 cut(s) 193
CviJI RGCY 5 cut(s) 68, 87, 125, 134, 202
CviKI_1 RGCY 5 cut(s) 68, 87, 125, 134, 202
Eco130I CCWWGG 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 196
FaiI YATR 1 cut(s) 194
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 2 cut(s) 90, 122
GlaI GCGC 3 cut(s) 142, 272, 274
GluI GCNGC 1 cut(s) 126
HapII CCGG 1 cut(s) 204
HhaI GCGC 3 cut(s) 143, 273, 275
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 3 cut(s) 141, 271, 273
HinP1I GCGC 3 cut(s) 141, 271, 273
HinfI GANTC 2 cut(s) 25, 161
HpaII CCGG 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 49, 190
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 122, 131, 140
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 3 cut(s) 141, 271, 273
LmnI GCTCC 2 cut(s) 65, 199
LpnPI CCDG 5 cut(s) 64, 80, 211, 217, 261
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 2 cut(s) 90, 122
MaeIII GTNAC 2 cut(s) 98, 242
MboII GAAGA 2 cut(s) 64, 162
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 19, 44
MnlI CCTC 2 cut(s) 177, 210
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 2 cut(s) 204, 205
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 84, 122, 131, 140
NciI CCSGG 2 cut(s) 204, 205
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 201
PauI GCGCGC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 25, 161
PkrI GCNGC 1 cut(s) 127
PspEI GGTNACC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 201
PteI GCGCGC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 126
ScrFI CCNGG 2 cut(s) 204, 205
SduI GDGCHC 1 cut(s) 204
SetI ASST 3 cut(s) 70, 89, 127
SmaI CCCGGG 1 cut(s) 205
Sse9I AATT 2 cut(s) 19, 44
SsiI CCGC 1 cut(s) 116
SspI AATATT 1 cut(s) 257
SspMI CTAG 2 cut(s) 90, 122
StyD4I CCNGG 2 cut(s) 202, 203
StyI CCWWGG 1 cut(s) 104
TasI AATT 2 cut(s) 19, 44
TfiI GAWTC 2 cut(s) 25, 161
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 87, 100, 209
TspMI CCCGGG 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 89
XmaI CCCGGG 1 cut(s) 203
XspI CTAG 2 cut(s) 90, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.