Rh4DG361100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002690
Physical Location & Seq
Forward (+)
58326971 .. 58327348
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG361100.1

Sequence Viewer

Length: 270 bp
ATGTTCCAACGCTGCCACAGGGAAAGCTCTGGACAGGATGAGAAAGGTGGTGCGTCGTCCGGTTACTCTTGGCTCTCCAAAGCAGCAATTGCTGCCGGCGCAATTGCGGGACTAGCTGTTGTGGCTTTGGGCGTAGCTGAACTCGTTTCGGGTTCAACGTCTTCAGAAGAGGAGAAGAAAACCATGAAGGCGCCCGGAAGAGACCAGAGGATTTACAGGGAGGACTTTGAGCGTGACCCTAAACGGTATTTCAAAGACTTGCGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.77

Weight (kDa)

9.16

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 156, 253
AluBI AGCT 3 cut(s) 27, 116, 137
AluI AGCT 3 cut(s) 27, 116, 137
Alw26I GTCTC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 12, 83, 92
AspLEI GCGC 3 cut(s) 101, 193, 264
AsuC2I CCSGG 1 cut(s) 195
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 79, 95
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 3 cut(s) 13, 84, 93
BlsI GCNGC 3 cut(s) 14, 85, 94
Bme1390I CCNGG 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 95
BseGI GGATG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 79, 95
BshNI GGYRCC 1 cut(s) 190
BsiSI CCGG 3 cut(s) 60, 96, 195
BslFI GGGAC 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 195
BspACI CCGC 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssNI GRCGYC 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 162, 193
BstACI GRCGYC 1 cut(s) 191
BstAPI GCANNNNNTGC 2 cut(s) 89, 92
BstC8I GCNNGC 1 cut(s) 97
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 3 cut(s) 101, 193, 264
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 5 cut(s) 89, 92, 98, 113, 122
BstSCI CCNGG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 79, 95
BstV2I GAAGAC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 3 cut(s) 101, 193, 264
Cfr10I RCCGGY 1 cut(s) 95
CseI GACGC 1 cut(s) 42
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 27, 73, 116, 125, 137
CviKI_1 RGCY 5 cut(s) 27, 73, 116, 125, 137
DinI GGCGCC 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 162, 193
EarI CTCTTC 2 cut(s) 162, 193
Eco31I GGTCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 147
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
FaeI CATG 1 cut(s) 187
FaiI YATR 1 cut(s) 185
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 183
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 13, 84, 93
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 3 cut(s) 13, 84, 93
FspBI CTAG 1 cut(s) 113
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 3 cut(s) 100, 192, 263
GluI GCNGC 3 cut(s) 13, 84, 93
HaeII RGCGCY 1 cut(s) 194
HapII CCGG 3 cut(s) 60, 96, 195
HgaI GACGC 1 cut(s) 42
HhaI GCGC 3 cut(s) 101, 193, 264
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 3 cut(s) 99, 191, 262
HinP1I GCGC 3 cut(s) 99, 191, 262
HpaII CCGG 3 cut(s) 60, 96, 195
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 92, 98, 113, 122
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 3 cut(s) 99, 191, 262
KasI GGCGCC 1 cut(s) 190
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 4, 15, 20, 73, 109, 202, 208, 218
Lsp1109I GCAGC 2 cut(s) 79, 95
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 62, 233
MboII GAAGA 4 cut(s) 153, 179, 187, 210
MfeI CAATTG 2 cut(s) 87, 102
MluCI AATT 2 cut(s) 87, 102
Mly113I GGCGCC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 3 cut(s) 163, 201, 214
MroNI GCCGGC 1 cut(s) 95
MspI CCGG 3 cut(s) 60, 96, 195
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 2 cut(s) 87, 102
MwoI GCNNNNNNNGC 5 cut(s) 89, 92, 98, 113, 122
NaeI GCCGGC 1 cut(s) 97
NarI GGCGCC 1 cut(s) 191
NciI CCSGG 1 cut(s) 195
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 233
NsbI TGCGCA 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 97
PkrI GCNGC 3 cut(s) 14, 85, 94
PluTI GGCGCC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 192
SatI GCNGC 3 cut(s) 13, 84, 93
ScrFI CCNGG 1 cut(s) 195
SetI ASST 5 cut(s) 29, 49, 118, 139, 161
SfoI GGCGCC 1 cut(s) 192
Sse9I AATT 2 cut(s) 87, 102
SsiI CCGC 1 cut(s) 107
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 1 cut(s) 161
TasI AATT 2 cut(s) 87, 102
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 3 cut(s) 12, 83, 92
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 200
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.