Prupe.5G145700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0002690
Physical Location & Seq
Reverse (-)
13408225 .. 13409076
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G145700.1

Sequence Viewer

Length: 291 bp
ATGGGAGCGAATGAAAGCAGGGAAGGGTCTGGAAACAATGAGGAAAATGGTGGTGACTTGCGTAACGACAAGGCTGACTTGTCCACTGGTGCAATTGCAGCTGGCGCTGTGGCAGGAGCGGCTCTGCTAGCCTATGGTTTATCCCGTCTTGTTTCAGGTTCAGGTTCAGAATCAGAACCAAAGCAGAAGGGGAAGACGATGAAAGCTCCGGGCCGAGGAGGTGAGCAAATCTTAAGGGATGATTTTGCGCGTGACCCTAAAGCTTATTTCAAAGACCTCCACCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

9.99

Weight (kDa)

8.01

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 119
AccII CGCG 1 cut(s) 250
AciI CCGC 2 cut(s) 119, 283
AfiI CCNNNNNNNGG 1 cut(s) 215
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 3 cut(s) 101, 206, 263
AluI AGCT 3 cut(s) 101, 206, 263
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 107, 250
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 65, 233
AsuNHI GCTAGC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 232
BisI GCNGC 2 cut(s) 99, 120
BlsI GCNGC 2 cut(s) 100, 121
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 210
BmtI GCTAGC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 213
BspACI CCGC 2 cut(s) 119, 283
BspANI GGCC 1 cut(s) 213
BspFNI CGCG 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 214
BstAFI CTTAAG 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 103, 129
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 250
BstMWI GCNNNNNNNGC 4 cut(s) 98, 104, 119, 128
BstSCI CCNGG 1 cut(s) 208
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 103, 129
CfoI GCGC 2 cut(s) 107, 250
Cfr13I GGNCC 1 cut(s) 211
CviJI RGCY 7 cut(s) 74, 101, 122, 131, 206, 213, 263
CviKI_1 RGCY 7 cut(s) 74, 101, 122, 131, 206, 213, 263
FaiI YATR 1 cut(s) 135
FalI AAGNNNNNCTT 2 cut(s) 62, 94
Fnu4HI GCNGC 2 cut(s) 99, 120
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 99, 120
FspBI CTAG 1 cut(s) 128
GlaI GCGC 2 cut(s) 106, 249
GluI GCNGC 2 cut(s) 99, 120
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 209
HhaI GCGC 2 cut(s) 107, 250
Hin6I GCGC 2 cut(s) 105, 248
HinP1I GCGC 2 cut(s) 105, 248
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 65, 233
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 169, 175
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 17, 181
HpyCH4V TGCA 2 cut(s) 92, 98
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 104, 119, 128
HspAI GCGC 2 cut(s) 105, 248
LmnI GCTCC 3 cut(s) 5, 116, 211
LpnPI CCDG 8 cut(s) 4, 15, 72, 87, 99, 141, 147, 222
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 3 cut(s) 53, 62, 251
MbiI CCGCTC 1 cut(s) 119
MboII GAAGA 1 cut(s) 205
MfeI CAATTG 1 cut(s) 93
MluCI AATT 1 cut(s) 93
MnlI CCTC 4 cut(s) 34, 209, 212, 287
MseI TTAA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 232
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 93
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 4 cut(s) 98, 104, 119, 128
NciI CCSGG 1 cut(s) 210
NheI GCTAGC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 2 cut(s) 53, 251
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 100, 121
PspPI GGNCC 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 99, 120
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 210
SetI ASST 7 cut(s) 103, 160, 166, 208, 223, 265, 279
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 1 cut(s) 93
SsiI CCGC 2 cut(s) 119, 283
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 208
TasI AATT 1 cut(s) 93
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 53, 251
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 2 cut(s) 53, 251
TspDTI ATGAA 2 cut(s) 27, 215
TspRI CASTG 1 cut(s) 91
Vha464I CTTAAG 1 cut(s) 232
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.