Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Forward (+)

3449995 .. 3450225

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGAAGCCAGCAAAGAATCGAATACTAATGTCCCGGTGGAAGACAATCAAAATGCTGGGGTTGAGGTTTATTCCTCCAATGTGGCACCTGATGGTGCTGGAGGAGCTAAAGCAGGAGGGAGTACTGGTACCGAAGACAAAACAACGAAAGCACCCGAAAGAGATGCTACAATCTCCAAGGACAGCTTTGAGAGCAACCCTACTGCCAATGTCAAATATTTGCGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

7.89

Weight (kDa)

4.79

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	2 cut(s)	85, 128
AfaI	GTAC	2 cut(s)	124, 130
AluBI	AGCT	2 cut(s)	107, 186
AluI	AGCT	2 cut(s)	107, 186
Asp718I	GGTACC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	85, 128
BbsI	GAAGAC	2 cut(s)	48, 141
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcnI	CCSGG	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	87, 130
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	48, 141
BpmI	CTGGAG	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	56
BshNI	GGYRCC	2 cut(s)	85, 128
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	87, 130
BspT107I	GGYRCC	2 cut(s)	85, 128
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 192
BstSCI	CCNGG	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	48, 141
Cac8I	GCNNGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	123, 129
CviJI	RGCY	3 cut(s)	8, 107, 186
CviKI_1	RGCY	3 cut(s)	8, 107, 186
CviQI	GTAC	2 cut(s)	123, 129
Eco130I	CCWWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	120
HapII	CCGG	1 cut(s)	35
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 192
KpnI	GGTACC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	22, 42, 48, 84, 99, 102, 111
LweI	GCATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	53, 146
MnlI	CCTC	4 cut(s)	58, 85, 95, 110
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	104, 192
NciI	CCSGG	1 cut(s)	35
NlaIV	GGNNCC	2 cut(s)	87, 130
PfeI	GAWTC	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	87, 130
RsaI	GTAC	2 cut(s)	124, 130
RsaNI	GTAC	2 cut(s)	123, 129
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	4 cut(s)	69, 91, 109, 188
SfaNI	GCATC	1 cut(s)	154
SspI	AATATT	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	177
TaqI	TCGA	1 cut(s)	20
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.