Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Reverse (-)

13376835 .. 13377071

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCGAGCTAATGAAAGCAGGGAAGGCTCTTGGAGCATCAAGGACGTGTCCAATGGTGTAATTGCAGCTGCCACTGTGGGAGGAATGGCTCTGCTGGCCTATGGTTTATATGGACTTGTTTCAGCTTCAGAGCGGAGGAGGAAGACGATGAAAGCTCCAGGCAGAGGTGACCGAATCTTAAGGAATGATTTTCAGGCTAACCCAAAAGCTTATTTCAGAGACCTCCACCGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.65

Weight (kDa)

10.66

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	133
AciI	CCGC	2 cut(s)	133, 229
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	8, 68, 125, 155, 209
AluI	AGCT	5 cut(s)	8, 68, 125, 155, 209
Alw26I	GTCTC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	65, 68
AsuHPI	GGTGA	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	55, 77
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	2 cut(s)	66, 69
BlsI	GCNGC	2 cut(s)	67, 70
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	55, 77
BshFI	GGCC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	133, 229
BspANI	GGCC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	76
BstAFI	CTTAAG	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	6, 96
BstEII	GGTNACC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 33, 95
BstNI	CCWGG	1 cut(s)	159
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	55, 77
BstV2I	GAAGAC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	6, 96
CviJI	RGCY	9 cut(s)	8, 27, 68, 89, 98, 125, 155, 197, 209
CviKI_1	RGCY	9 cut(s)	8, 27, 68, 89, 98, 125, 155, 197, 209
Eco31I	GGTCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	157
FaiI	YATR	3 cut(s)	102, 109, 111
Fnu4HI	GCNGC	2 cut(s)	66, 69
Fsp4HI	GCNGC	2 cut(s)	66, 69
GluI	GCNGC	2 cut(s)	66, 69
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	130, 218
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 33, 95
HpySE526I	ACGT	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	33, 160
LpnPI	CCDG	5 cut(s)	4, 80, 144, 171, 179
Lsp1109I	GCAGC	2 cut(s)	55, 77
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	167
MbiI	CCGCTC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	154
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	5 cut(s)	74, 129, 132, 158, 233
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	24, 33, 95
NmuCI	GTSAC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	67, 70
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	66, 69
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	8 cut(s)	10, 48, 70, 127, 157, 169, 211, 225
SfaNI	GCATC	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	133, 229
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	65, 68
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	27, 164
TspRI	CASTG	1 cut(s)	79
Vha464I	CTTAAG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.