Rh4BG215300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002690
Physical Location & Seq
Forward (+)
37460253 .. 37460501
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG215300.1

Sequence Viewer

Length: 249 bp
ATGGGAGCTAATGTTAGCAGGAAAAGCTCTGGACAGGGTGAGAATGGTGGTGCACTGTCCGGTAACCCTTGGTTCATTGCGGGACTAGCTGCTGTGGCTTTGGGCGCAGCTAAACTGGTTTGGGATTCAGCTTTTTCAGGAAAGCAGAGGAAAACCATGAAGGCTCCAGGGGGAAACGAGAGGATTTACAGGCAAGACTTTGAGCGTTCCCCTAAACAATATTTCCAAGACAAGCGCGCACGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.9

Weight (kDa)

10.54

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AciI CCGC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 5 cut(s) 8, 27, 89, 110, 131
AluI AGCT 5 cut(s) 8, 27, 89, 110, 131
Alw21I GWGCWC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 51
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 89, 107
AspLEI GCGC 3 cut(s) 107, 237, 239
AsuHPI GGTGA 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 76, 119
BciT130I CCWGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 86
BisI GCNGC 2 cut(s) 90, 108
BlsI GCNGC 2 cut(s) 91, 109
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 68, 167
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 68, 167
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 120
BsePI GCGCGC 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 76, 119
Bsh1236I CGCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 55
BspACI CCGC 1 cut(s) 80
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 68, 167
BssHII GCGCGC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 237, 241
BstEII GGTNACC 1 cut(s) 62
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 3 cut(s) 107, 237, 239
BstMWI GCNNNNNNNGC 4 cut(s) 24, 86, 95, 104
BstNI CCWGG 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 76, 119
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 237, 241
CfoI GCGC 3 cut(s) 107, 237, 239
CviAII CATG 1 cut(s) 157
CviJI RGCY 7 cut(s) 8, 27, 89, 98, 110, 131, 164
CviKI_1 RGCY 7 cut(s) 8, 27, 89, 98, 110, 131, 164
Eco130I CCWWGG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 160
FaiI YATR 1 cut(s) 158
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 90, 108
Fsp4HI GCNGC 2 cut(s) 90, 108
FspBI CTAG 1 cut(s) 86
GlaI GCGC 3 cut(s) 106, 236, 238
GluI GCNGC 2 cut(s) 90, 108
GsuI CTGGAG 1 cut(s) 150
HapII CCGG 1 cut(s) 60
HhaI GCGC 3 cut(s) 107, 237, 239
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 3 cut(s) 105, 235, 237
HinP1I GCGC 3 cut(s) 105, 235, 237
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 30, 138
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 86, 95, 104
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 3 cut(s) 105, 235, 237
LmnI GCTCC 2 cut(s) 5, 169
LpnPI CCDG 9 cut(s) 4, 15, 20, 73, 101, 123, 153, 175, 180
Lsp1109I GCAGC 2 cut(s) 76, 119
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 55
MnlI CCTC 2 cut(s) 141, 174
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 24, 86, 95, 104
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 165
PauI GCGCGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 91, 109
Psp6I CCWGG 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 165
PteI GCGCGC 1 cut(s) 235
SatI GCNGC 2 cut(s) 90, 108
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 10, 29, 91, 112, 133
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 221
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 1 cut(s) 60
TseI GCWGC 2 cut(s) 89, 107
TspDTI ATGAA 2 cut(s) 64, 173
TspRI CASTG 1 cut(s) 60
VneI GTGCAC 1 cut(s) 51
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.