Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Reverse (-)

9357093 .. 9357308

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G054900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGAGGCGGCAAAGGATCTAATGGTAATAGTAATAGCCAGGTGGCAAACCCAAATGCTAGTGGGGCCAAGTCATCCGATGTGGCAGCAGCAGCAGCAAGTGGTGGTGGAGCCCCTGCAGCAGGGTCTATGAAAGCTCCTGGAAGAGATGATACAATCTCCAGGGAGAGCTTTGAGAGCAACCCAGCTGCCTATTTCAAGGATTTGCGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

6.87

Weight (kDa)

9.3

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	209
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	3 cut(s)	39, 139, 161
AluBI	AGCT	3 cut(s)	137, 171, 188
AluI	AGCT	3 cut(s)	137, 171, 188
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	6 cut(s)	86, 89, 92, 95, 119, 188
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
BbvI	GCAGC	6 cut(s)	98, 101, 104, 107, 131, 175
BciT130I	CCWGG	3 cut(s)	41, 141, 163
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	7 cut(s)	10, 87, 90, 93, 96, 120, 189
BlsI	GCNGC	7 cut(s)	11, 88, 91, 94, 97, 121, 190
Bme1390I	CCNGG	3 cut(s)	41, 141, 163
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	67, 112
BmrFI	CCNGG	3 cut(s)	41, 141, 163
BpmI	CTGGAG	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseBI	CCWGG	3 cut(s)	41, 141, 163
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseXI	GCAGC	6 cut(s)	98, 101, 104, 107, 131, 175
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	67, 112
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	41, 141, 163
Bst6I	CTCTTC	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 92, 95, 119, 177
BstNI	CCWGG	3 cut(s)	41, 141, 163
BstSCI	CCNGG	3 cut(s)	39, 139, 161
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	6 cut(s)	98, 101, 104, 107, 131, 175
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	66
CviJI	RGCY	6 cut(s)	39, 68, 113, 137, 171, 188
CviKI_1	RGCY	6 cut(s)	39, 68, 113, 137, 171, 188
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	120
EcoRII	CCWGG	3 cut(s)	39, 139, 161
EcoT38I	GRGCYC	1 cut(s)	115
FaiI	YATR	1 cut(s)	131
Fnu4HI	GCNGC	7 cut(s)	10, 87, 90, 93, 96, 120, 189
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	7 cut(s)	10, 87, 90, 93, 96, 120, 189
FspBI	CTAG	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	7 cut(s)	10, 87, 90, 93, 96, 120, 189
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 92, 95, 119, 177
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	110, 142
LpnPI	CCDG	9 cut(s)	26, 53, 108, 126, 129, 148, 153, 175, 198
Lsp1109I	GCAGC	6 cut(s)	98, 101, 104, 107, 131, 175
MaeI	CTAG	1 cut(s)	60
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	3 cut(s)	41, 141, 163
MvaI	CCWGG	3 cut(s)	41, 141, 163
MwoI	GCNNNNNNNGC	5 cut(s)	65, 92, 95, 119, 177
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	2 cut(s)	67, 112
NsbI	TGCGCA	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	11, 88, 91, 94, 97, 121, 190
Psp6I	CCWGG	3 cut(s)	39, 139, 161
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	3 cut(s)	39, 139, 161
PspN4I	GGNNCC	2 cut(s)	67, 112
PspPI	GGNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	188
SatI	GCNGC	7 cut(s)	10, 87, 90, 93, 96, 120, 189
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	41, 141, 163
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	45, 139, 173, 190
SfcI	CTRYAG	1 cut(s)	117
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	39, 139, 161
TauI	GCSGC	1 cut(s)	12
TseI	GCWGC	6 cut(s)	86, 89, 92, 95, 119, 188
TspDTI	ATGAA	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	120
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.