Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002690

Physical Location & Seq

Genomic Coordinates Reverse (-)

46379779 .. 46380027

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG226700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGAGCCAATGAAAGCAGGAAAAGCTCTGGACAGGATGAGAATGGTGGTGCACCGTCCGGTAACCCTTGGTTCATTGCGGGACTAGCTGCTGTGGCTTTGGGCGCAGCTAAACTGGTTTTGGATTCAACTTCTTCAGAAAAGCAGAGGAAAACCATGAAGGCGCCCGGGGGAAACGAGAGGATTTACAGGGACGACTTTGAGCGTGACCCTAAACAATATTTCCAAGACAAGCGCGGACGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

8.95

Weight (kDa)

9.63

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29520 FvH4_4g29530 FvH4_4g29550 FvH4_4g29560
malus_domestica	MD03G1131700.v1.1 MD03G1132100.v1.1 MD03G1132200.v1.1 MD11G1154600.v1.1
prunus_persica	Prupe.1G291000_v2.0.a1 Prupe.1G296800_v2.0.a1 Prupe.1G297000_v2.0.a1 Prupe.5G145500_v2.0.a1 Prupe.5G145700_v2.0.a1 Prupe.7G054900_v2.0.a1
pyrus_communis	pycom13g05150 pycom13g05180
rosa_chinensis	RchiOBHm_Chr1g0340821 RchiOBHm_Chr4g0418511
rosa_laevigata	RLG00000006415 RLG00000007857 RLG00000007858 RLG00000029047
rosa_multiflora	Rmu_sc0000363.1_g000045
rosa_roxburghii	Rroxscaffold_5G00361750 Rroxscaffold_5G00361760 Rroxscaffold_5G00361770 Rroxscaffold_5G00378890
rosa_rugosa	Rorug04G0303700
rosa_samantha	Rh1AG176300 Rh4AG215400 Rh4AG215500 Rh4AG356000 Rh4BG215300 Rh4BG366600 Rh4CG226700 Rh4CG226800 Rh4CG380600 Rh4DG213600 Rh4DG213800 Rh4DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	80, 237
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	129
AluBI	AGCT	3 cut(s)	27, 89, 110
AluI	AGCT	3 cut(s)	27, 89, 110
Alw21I	GWGCWC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	89, 107
AspLEI	GCGC	3 cut(s)	107, 166, 237
AsuC2I	CCSGG	2 cut(s)	168, 169
AvaI	CYCGRG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	76, 119
BcnI	CCSGG	2 cut(s)	168, 169
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	2 cut(s)	90, 108
BlsI	GCNGC	2 cut(s)	91, 109
Bme1390I	CCNGG	2 cut(s)	168, 169
BmeT110I	CYCGRG	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	7, 165
BmrFI	CCNGG	2 cut(s)	168, 169
BpuMI	CCSGG	2 cut(s)	168, 169
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	68, 167, 168
BsaWI	WCCGGW	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	68, 167, 168
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	76, 119
Bsh1236I	CGCG	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	60, 168
BslFI	GGGAC	2 cut(s)	96, 206
BsmFI	GGGAC	2 cut(s)	96, 206
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	55
BspACI	CCGC	2 cut(s)	80, 237
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	7, 165
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	68, 167, 168
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	164
BstEII	GGTNACC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	3 cut(s)	107, 166, 237
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 86, 95, 104
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	166, 167
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	76, 119
BtsCI	GGATG	1 cut(s)	43
CfoI	GCGC	3 cut(s)	107, 166, 237
Cfr9I	CCCGGG	1 cut(s)	167
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	5 cut(s)	8, 27, 89, 98, 110
CviKI_1	RGCY	5 cut(s)	8, 27, 89, 98, 110
DinI	GGCGCC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	68
EgeI	GGCGCC	1 cut(s)	165
EheI	GGCGCC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FaqI	GGGAC	2 cut(s)	96, 206
FatI	CATG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	90, 108
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	90, 108
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	3 cut(s)	106, 165, 236
GluI	GCNGC	2 cut(s)	90, 108
HaeII	RGCGCY	1 cut(s)	167
HapII	CCGG	2 cut(s)	60, 168
HhaI	GCGC	3 cut(s)	107, 166, 237
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	3 cut(s)	105, 164, 235
HinP1I	GCGC	3 cut(s)	105, 164, 235
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	60, 168
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 86, 95, 104
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	3 cut(s)	105, 164, 235
KasI	GGCGCC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	7 cut(s)	4, 15, 20, 73, 101, 175, 181
Lsp1109I	GCAGC	2 cut(s)	76, 119
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	62, 206
MboII	GAAGA	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	55
Mly113I	GGCGCC	1 cut(s)	164
MnlI	CCTC	2 cut(s)	141, 174
MspI	CCGG	2 cut(s)	60, 168
MspR9I	CCNGG	2 cut(s)	168, 169
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	24, 86, 95, 104
NarI	GGCGCC	1 cut(s)	164
NciI	CCSGG	2 cut(s)	168, 169
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	7, 165
NmuCI	GTSAC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	91, 109
PluTI	GGCGCC	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	7, 165
SatI	GCNGC	2 cut(s)	90, 108
ScrFI	CCNGG	2 cut(s)	168, 169
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	3 cut(s)	29, 91, 112
SfoI	GGCGCC	1 cut(s)	165
SmaI	CCCGGG	1 cut(s)	169
SsiI	CCGC	2 cut(s)	80, 237
SspDI	GGCGCC	1 cut(s)	163
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	166, 167
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	89, 107
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	27, 64, 173
TspMI	CCCGGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	51
XmaI	CCCGGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.