FvH4_5g10670

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003928
Physical Location & Seq
Reverse (-)
6062481 .. 6063049
569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10670.t1

Sequence Viewer

Length: 267 bp
ATGTCGATGCTCGATTCCTTCTTCGACAAGGGCTTCAAAGCCACCAAATGCAAAACTATTCCGCGGATAAGGCTGCTGAGGAACAGGAGAGAAAGTCAGATCAAACAGATGCGCCGTGACATTGCCAAGCTTCTTGAGACTGGCCAAGAAGCTACTGCTCGGATTCGGGTAGAGCGTATTATTAGAGAAGAGAATATGATGGCTGCTCAGGAGTTAATTGAGCTATATTGTGAGCTGATATCTGTCCGCCTTCCAATAGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

89

Amino Acids

10.43

Weight (kDa)

9.69

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ist1 PF03398 19 - 87 7.1e-23 Regulator of Vps4 activity in the MVB pathway
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 64
AciI CCGC 3 cut(s) 62, 64, 247
AcoI YGGCCR 1 cut(s) 142
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 4 cut(s) 130, 152, 223, 235
AluI AGCT 4 cut(s) 130, 152, 223, 235
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 73, 203
AspLEI GCGC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 60, 190
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 2 cut(s) 74, 204
BlsI GCNGC 2 cut(s) 75, 205
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 2 cut(s) 77, 207
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 68, 221
BseNI ACTGG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 60, 190
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 3 cut(s) 62, 64, 247
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 69, 220
BspFNI CGCG 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 77, 207
BstDSI CCRYGG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 60, 190
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 62
CfoI GCGC 1 cut(s) 114
Cfr42I CCGCGG 1 cut(s) 65
CviJI RGCY 9 cut(s) 33, 41, 73, 130, 144, 152, 203, 223, 235
CviKI_1 RGCY 9 cut(s) 33, 41, 73, 130, 144, 152, 203, 223, 235
DdeI CTNAG 2 cut(s) 77, 207
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 236
Eco32I GATATC 1 cut(s) 240
EcoRV GATATC 1 cut(s) 240
FaiI YATR 2 cut(s) 197, 226
Fnu4HI GCNGC 2 cut(s) 74, 204
Fsp4HI GCNGC 2 cut(s) 74, 204
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 74, 204
HaeIII GGCC 1 cut(s) 144
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 14, 163
Hpy188I TCNGA 2 cut(s) 99, 162
Hpy188III TCNNGA 2 cut(s) 134, 209
HpyAV CCTTC 2 cut(s) 28, 260
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 77, 207
HspAI GCGC 1 cut(s) 112
KspI CCGCGG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 70, 126, 194
Lsp1109I GCAGC 2 cut(s) 60, 190
LweI GCATC 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 13, 200
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 1 cut(s) 216
MluNI TGGCCA 1 cut(s) 144
MnlI CCTC 1 cut(s) 72
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 64
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PfeI GAWTC 2 cut(s) 14, 163
PkrI GCNGC 2 cut(s) 75, 205
SacII CCGCGG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 74, 204
Sau3AI GATC 1 cut(s) 99
SetI ASST 4 cut(s) 132, 154, 225, 237
SfaNI GCATC 1 cut(s) 99
Sfr303I CCGCGG 1 cut(s) 65
SgrBI CCGCGG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 216
SsiI CCGC 3 cut(s) 62, 64, 247
TaqI TCGA 3 cut(s) 5, 12, 24
TasI AATT 1 cut(s) 216
TfiI GAWTC 2 cut(s) 14, 163
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 73, 203
Tsp45I GTSAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.