Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034225.1

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1393

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 931 bp

gctgtctgttagaacccctacgggtgaagtaaagctgaaaatcatgaaggaaatagcgaaggaataccaggttgattgggacacaacagaatctgaacaagaacttctcaaacctccagaagagactctagatggaccgcgtacttttgttagtgctaccagcttgcctgtgacaacccaattttttgagtctaacaagtcagaaacaaggctttcttccagttcgttgcgcagaacaagtggtggtggacagagggaaaccagttctacgcgcagaatgagtgatggtggagaaagggaaactagttcctttcgcagaacaagcggtggtggagaaagagaaaccagaacaagtggtggtggagaaaagggacatttgcaatttgcagactcggcatcagctgccgcagcagctgcaaaatctgccagtgatgcaatggcggctgcacaagtggctgcatttctggccaacaaagactccaatcgggcatctgctaatgaatttaaaaccctttcgagcaattccaccggccaacaaggaccagatagtccatctcttgactcttatgacatggatcatcaatatgaagctgagggaaaaacacactgggcggagagtttggacaggtcatattcttcaaacaatgacgttaaccatggaggagaggtgaagaattttgtctatagaagatacagctacaatgctgcaccatcagaaaattcaggtatgaagtttgatgaatcagacaccgatgaagggattgaaatggaagcacctcctagtgggaattatcaagggcctgagcgtcctccaccaccagtaccttcggcaactgttcggcaggactcacttcatcgcgttcatcccaaattgcctgattacgatacacttgctgctcgctttgatgcccttaagcatcatcacaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

309

Amino Acids

33.72

Weight (kDa)

5.47

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
Acc16I	TGCGCA	1 cut(s)	231
AccII	CGCG	3 cut(s)	140, 272, 859
AciI	CCGC	5 cut(s)	138, 325, 406, 441, 612
AclWI	GGATC	1 cut(s)	583
AcoI	YGGCCR	2 cut(s)	466, 530
AcsI	RAATTY	3 cut(s)	501, 674, 719
AfaI	GTAC	2 cut(s)	143, 823
AfiI	CCNNNNNNNGG	2 cut(s)	757, 783
AflII	CTTAAG	1 cut(s)	912
AgsI	TTSAA	2 cut(s)	640, 765
AhlI	ACTAGT	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	6 cut(s)	35, 163, 402, 414, 591, 697
AluI	AGCT	6 cut(s)	35, 163, 402, 414, 591, 697
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	583
AlwNI	CAGNNNCTG	2 cut(s)	93, 414
AoxI	GGCC	3 cut(s)	466, 530, 798
ApeKI	GCWGC	8 cut(s)	402, 408, 411, 414, 444, 456, 705, 894
ApoI	RAATTY	3 cut(s)	501, 674, 719
AspLEI	GCGC	2 cut(s)	232, 274
AspS9I	GGNCC	3 cut(s)	135, 540, 798
AsuHPI	GGTGA	2 cut(s)	36, 680
AvaII	GGWCC	2 cut(s)	135, 540
BalI	TGGCCA	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	592
BbvI	GCAGC	8 cut(s)	389, 401, 420, 423, 431, 443, 692, 881
BccI	CCATC	4 cut(s)	126, 279, 560, 719
BcgI	CGANNNNNNTGC	2 cut(s)	873, 907
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	303
BfaI	CTAG	3 cut(s)	129, 304, 781
BfmI	CTRYAG	1 cut(s)	683
BfrI	CTTAAG	1 cut(s)	912
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	2 cut(s)	135, 540
BmgT120I	GGNCC	3 cut(s)	135, 540, 798
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	5 cut(s)	405, 422, 498, 896, 926
BmuI	ACTGGG	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	100
Bpu10I	CCTNAGC	2 cut(s)	592, 802
BsaJI	CCNNGG	1 cut(s)	656
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 652, 682
Bsc4I	CCNNNNNNNGG	2 cut(s)	757, 783
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	5 cut(s)	220, 262, 427, 612, 819
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	863
BseLI	CCNNNNNNNGG	2 cut(s)	757, 783
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	583, 793
BseNI	ACTGG	5 cut(s)	220, 262, 427, 612, 819
BseRI	GAGGAG	1 cut(s)	676
BseXI	GCAGC	8 cut(s)	389, 401, 420, 423, 431, 443, 692, 881
BsgI	GTGCAG	2 cut(s)	430, 691
Bsh1236I	CGCG	3 cut(s)	140, 272, 859
BshFI	GGCC	3 cut(s)	468, 532, 800
BsiSI	CCGG	1 cut(s)	529
BslFI	GGGAC	2 cut(s)	93, 385
BslI	CCNNNNNNNGG	2 cut(s)	757, 783
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	93, 385
BsnI	GGCC	3 cut(s)	468, 532, 800
Bsp143I	GATC	1 cut(s)	575
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	5 cut(s)	138, 325, 406, 441, 612
BspANI	GGCC	3 cut(s)	468, 532, 800
BspCNI	CTCAG	2 cut(s)	584, 794
BspFNI	CGCG	3 cut(s)	140, 272, 859
BspHI	TCATGA	1 cut(s)	43
BspPI	GGATC	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	528
BsrI	ACTGG	5 cut(s)	220, 262, 427, 612, 819
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	912
BstAPI	GCANNNNNTGC	3 cut(s)	402, 414, 423
BstC8I	GCNNGC	2 cut(s)	165, 899
BstDEI	CTNAG	2 cut(s)	592, 802
BstDSI	CCRYGG	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	863
BstFNI	CGCG	3 cut(s)	140, 272, 859
BstHHI	GCGC	2 cut(s)	232, 274
BstKTI	GATC	1 cut(s)	578
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	683
BstUI	CGCG	3 cut(s)	140, 272, 859
BstV1I	GCAGC	8 cut(s)	389, 401, 420, 423, 431, 443, 692, 881
BsuRI	GGCC	3 cut(s)	468, 532, 800
BtgI	CCRYGG	1 cut(s)	656
BtgZI	GCGATG	1 cut(s)	840
BtsCI	GGATG	1 cut(s)	863
BtsIMutI	CAGTG	2 cut(s)	434, 605
Cac8I	GCNNGC	2 cut(s)	165, 899
CaiI	CAGNNNCTG	2 cut(s)	93, 414
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	232, 274
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	3 cut(s)	135, 540, 798
CseI	GACGC	1 cut(s)	795
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	142, 822
CviAII	CATG	3 cut(s)	44, 572, 657
CviQI	GTAC	2 cut(s)	142, 822
DdeI	CTNAG	2 cut(s)	592, 802
DpnI	GATC	1 cut(s)	577
DpnII	GATC	1 cut(s)	575
DraI	TTTAAA	1 cut(s)	506
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	2 cut(s)	466, 530
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	135, 540
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	3 cut(s)	47, 575, 660
FaiI	YATR	8 cut(s)	45, 568, 573, 586, 632, 658, 685, 729
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	2 cut(s)	93, 385
FatI	CATG	3 cut(s)	43, 571, 656
FokI	GGATG	1 cut(s)	850
FspBI	CTAG	3 cut(s)	129, 304, 781
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	2 cut(s)	231, 273
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	468, 532, 800
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	795
HhaI	GCGC	2 cut(s)	232, 274
Hin1II	CATG	3 cut(s)	47, 575, 660
Hin6I	GCGC	2 cut(s)	230, 272
HinP1I	GCGC	2 cut(s)	230, 272
HincII	GTYRAC	1 cut(s)	653
HindII	GTYRAC	1 cut(s)	653
HinfI	GANTC	8 cut(s)	90, 125, 189, 390, 477, 561, 741, 846
HpaI	GTTAAC	1 cut(s)	653
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	2 cut(s)	36, 680
Hpy166II	GTNNAC	2 cut(s)	249, 653
Hpy188I	TCNGA	4 cut(s)	95, 203, 716, 746
Hpy188III	TCNNGA	4 cut(s)	44, 117, 129, 558
Hpy8I	GTNNAC	2 cut(s)	249, 653
HpyAV	CCTTC	4 cut(s)	41, 53, 750, 835
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	7 cut(s)	380, 387, 417, 435, 447, 459, 708
HpyF3I	CTNAG	2 cut(s)	592, 802
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	3 cut(s)	47, 575, 660
HspAI	GCGC	2 cut(s)	230, 272
KspAI	GTTAAC	1 cut(s)	653
Kzo9I	GATC	1 cut(s)	575
Lsp1109I	GCAGC	8 cut(s)	389, 401, 420, 423, 431, 443, 692, 881
LweI	GCATC	5 cut(s)	405, 422, 498, 896, 926
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	3 cut(s)	129, 304, 781
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	577
MboI	GATC	1 cut(s)	575
MboII	GAAGA	5 cut(s)	132, 208, 628, 683, 700
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	8 cut(s)	180, 381, 501, 521, 674, 719, 788, 870
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	6 cut(s)	119, 198, 384, 471, 555, 840
MnlI	CCTC	7 cut(s)	124, 247, 587, 654, 659, 787, 820
Mox20I	TGGCCA	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	3 cut(s)	505, 652, 913
MslI	CAYNNNNRTG	1 cut(s)	583
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	2 cut(s)	402, 414
MspCI	CTTAAG	1 cut(s)	912
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	3 cut(s)	140, 272, 859
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	1 cut(s)	575
NlaIII	CATG	3 cut(s)	47, 575, 660
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	90, 741
PleI	GAGTC	6 cut(s)	119, 197, 384, 471, 555, 840
PpsI	GAGTC	6 cut(s)	119, 197, 384, 471, 555, 840
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	135, 540, 798
PstNI	CAGNNNCTG	2 cut(s)	93, 414
PvuII	CAGCTG	2 cut(s)	402, 414
RsaI	GTAC	2 cut(s)	143, 823
RsaNI	GTAC	2 cut(s)	142, 822
RseI	CAYNNNNRTG	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	505, 652, 913
Sau3AI	GATC	1 cut(s)	575
Sau96I	GGNCC	3 cut(s)	135, 540, 798
SchI	GAGTC	6 cut(s)	119, 198, 384, 471, 555, 840
ScrFI	CCNGG	1 cut(s)	69
SexAI	ACCWGGT	1 cut(s)	67
SfaNI	GCATC	5 cut(s)	405, 422, 498, 896, 926
SfcI	CTRYAG	1 cut(s)	683
SinI	GGWCC	2 cut(s)	135, 540
SmiMI	CAYNNNNRTG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	912
SmoI	CTYRAG	1 cut(s)	912
SpeI	ACTAGT	1 cut(s)	303
Sse9I	AATT	8 cut(s)	180, 381, 501, 521, 674, 719, 788, 870
SsiI	CCGC	5 cut(s)	138, 325, 406, 441, 612
SspMI	CTAG	3 cut(s)	129, 304, 781
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	516
TasI	AATT	8 cut(s)	180, 381, 501, 521, 674, 719, 788, 870
TauI	GCSGC	2 cut(s)	408, 444
TfiI	GAWTC	2 cut(s)	90, 741
Tru1I	TTAA	3 cut(s)	505, 652, 913
Tru9I	TTAA	3 cut(s)	505, 652, 913
TscAI	CASTG	2 cut(s)	434, 612
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	8 cut(s)	402, 408, 411, 414, 444, 456, 705, 894
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	8 cut(s)	60, 514, 601, 744, 754, 769, 843, 852
TspRI	CASTG	2 cut(s)	434, 612
Vha464I	CTTAAG	1 cut(s)	912
VpaK11BI	GGWCC	2 cut(s)	135, 540
XapI	RAATTY	3 cut(s)	501, 674, 719
XbaI	TCTAGA	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XspI	CTAG	3 cut(s)	129, 304, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.