Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

10401417 .. 10401911

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGGCTGCACAAGTGGCTGCATTTCTGGCCAACAAAGACTCCAATCGGGCATCTGCTAATGAATTTAAAACCCTTTCGAGCAATTCCACCGGCCAACAAGGACCAGATAGTCCATCTCTTGACTCTTATGACATGGATCATCAATATGAAGCTGAGGGAAAAACACACTGGGCGGAGAGTTTGGACAGGTCATATTCTTCAAACAATGACGTTAACCATGGAGGAGAGGGGAAGAATTTTGTCTATAGAAGATACAGCTACAATGCTGCACCATCAGAAAATTCAGGTATCAAGTTTGATGAATCAGACAACGATGAAGAGATTGAAATGGAAGCACCTCCTAGTGGGAATTATCAAGGGCCCGAGCGTCCTCCACCACCAGTACCTTCGGCAACTGTTAGGCAGGACTCACTTCATCGCGTTCATCCCAAATTGCCTGATTACGATACACTTGCTGCTCGCTTTGATGCCCTTAAGCATCATCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

164

Amino Acids

18.18

Weight (kDa)

5.15

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	5, 176
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	2 cut(s)	30, 94
AcsI	RAATTY	3 cut(s)	65, 238, 283
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	204, 329
AluBI	AGCT	2 cut(s)	155, 261
AluI	AGCT	2 cut(s)	155, 261
AlwI	GGATC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	30, 94, 362
ApaI	GGGCCC	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	8, 20, 269, 458
ApoI	RAATTY	3 cut(s)	65, 238, 283
AspS9I	GGNCC	3 cut(s)	104, 362, 363
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	7, 256, 445
BccI	CCATC	2 cut(s)	124, 283
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	247
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	5 cut(s)	6, 9, 21, 270, 459
BlsI	GCNGC	5 cut(s)	7, 10, 22, 271, 460
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	3 cut(s)	104, 362, 363
BmiI	GGNNCC	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	62, 460, 490
BmuI	ACTGGG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	176, 383
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	176, 383
BseRI	GAGGAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	7, 256, 445
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	32, 96, 364
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	347
BsnI	GGCC	3 cut(s)	32, 96, 364
BsoBI	CYCGRG	1 cut(s)	365
Bsp120I	GGGCCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	2 cut(s)	5, 176
BspANI	GGCC	3 cut(s)	32, 96, 364
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	176, 383
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 29
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	7, 256, 445
BsuRI	GGCC	3 cut(s)	32, 96, 364
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	104, 362, 363
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	2 cut(s)	136, 221
CviJI	RGCY	7 cut(s)	8, 20, 32, 96, 155, 261, 364
CviKI_1	RGCY	7 cut(s)	8, 20, 32, 96, 155, 261, 364
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DraI	TTTAAA	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	111
DseDI	GACNNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	2 cut(s)	30, 94
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	139, 224
FaiI	YATR	6 cut(s)	132, 137, 150, 196, 222, 249
FatI	CATG	2 cut(s)	135, 220
Fnu4HI	GCNGC	5 cut(s)	6, 9, 21, 270, 459
FokI	GGATG	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	6, 9, 21, 270, 459
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	5 cut(s)	6, 9, 21, 270, 459
HaeIII	GGCC	3 cut(s)	32, 96, 364
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	139, 224
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	41, 125, 305, 410
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	280, 310
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	11, 23, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 29
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	139, 224
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	14, 106, 120, 157, 175, 273, 392, 396, 453
Lsp1109I	GCAGC	3 cut(s)	7, 256, 445
LweI	GCATC	3 cut(s)	62, 460, 490
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	192, 247, 264, 332
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	6 cut(s)	65, 85, 238, 283, 352, 434
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	3 cut(s)	35, 119, 404
MnlI	CCTC	5 cut(s)	151, 218, 223, 351, 384
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	69, 216, 477
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	17, 29
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	139, 224
NlaIV	GGNNCC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	5 cut(s)	7, 10, 22, 271, 460
PleI	GAGTC	3 cut(s)	35, 119, 404
PpsI	GAGTC	3 cut(s)	35, 119, 404
PspN4I	GGNNCC	1 cut(s)	364
PspOMI	GGGCCC	1 cut(s)	362
PspPI	GGNCC	3 cut(s)	104, 362, 363
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	69, 216, 477
SatI	GCNGC	5 cut(s)	6, 9, 21, 270, 459
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	3 cut(s)	104, 362, 363
SchI	GAGTC	3 cut(s)	35, 119, 404
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	7 cut(s)	157, 194, 216, 263, 292, 343, 391
SfaNI	GCATC	3 cut(s)	62, 460, 490
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	65, 85, 238, 283, 352, 434
SsiI	CCGC	2 cut(s)	5, 176
SspMI	CTAG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	80
TasI	AATT	6 cut(s)	65, 85, 238, 283, 352, 434
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	3 cut(s)	69, 216, 477
Tru9I	TTAA	3 cut(s)	69, 216, 477
TscAI	CASTG	1 cut(s)	176
TseI	GCWGC	4 cut(s)	8, 20, 269, 458
TspDTI	ATGAA	6 cut(s)	78, 165, 318, 333, 407, 416
TspRI	CASTG	1 cut(s)	176
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	3 cut(s)	65, 238, 283
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.