Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

6530446 .. 6538085

Gene Structure 7640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09440.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTCATCGTCAGTGAAAAGGTTGGCTTGATTTTACACCGACTTCTGTCATTGGATTCTTCTCACACGATCCAGCTTTCTCCCACGCGTGTCAAACTCACAACGGCTATATTTTCCTTTTACAGGCCCAATTGCAGCGCAAAGGTCGGTCATCAAGTGGGCCCCGCAGAGGATCTGCTGTATAATTCCATATCTTGTTTCCCATTCCAATTCAGGCGACCGTTAAAAACCCAAAAAAAAAAAAAAAACCATCTTTCTCTCTCTGTGACCATGACGGTCGCCGCCGCAGCCACCACCCACACCAAGAAGCTGGTGAAGCTCGGCCGCTCTCTCTTCCGATGGGGATTCAACTCATCCAAATGCAAAATGCAAGCGAAGATGGCGGTGGCCAGAATAAAGCTGCTGAGGAACAAGAGGCAGGCGGTGGTGAAGCAGATGAGGCGTGACATCGCCTTACTCCTACAATCTGGTCAAGACGCCACTGCTCGAATCCGGGTTGAACATGTGATCAGGGAACAGAACATTTTGGCTGCCAACGAGTTCATTGAGCTCTTTTGTGAATTAGTAGTATCTAGACTTTCTATCATCGCAAAGCAAAGGGAGTGTCCGCCTGATCTCAAAGAAGGGATTGCTAGTTTAATCTTTGCCTCCCCCAGGTGCTCTGAGATTCCTGAACTAATTTCCCTAAGGAATATTTTTGAGAAAAAGTATGGTACAGATTTTGTATCTGCGGCTGTTGATGTACGTCCCAGCTGTGGTGTGAATCGCATGCTGATTGACAAGCTCTCTGTTAGAACCCCTACGGGTGAAGTAAAGTTGAAACTCCTCAAGGAGATAGCCAAGGAATACCAGGTTGAATGGGATACATCGGAATCTGAACAGGAACTTCTCAAGCCCCCAGAAGAGCTTATACAAGGACCATGCAATTTTGTTAGTGCTACCAGCATGCCTGTGCACAATGTGCAGCCTCAATCTGTTGAGACTAATAAGCCAGACACTAGTTCTTCACACAGAACAAGTGGTGGTGGAGAACGCAGAACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

349

Amino Acids

39.11

Weight (kDa)

9.81

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	327
AccII	CGCG	1 cut(s)	88
AciI	CCGC	8 cut(s)	165, 282, 285, 325, 383, 422, 608, 731
AclWI	GGATC	2 cut(s)	64, 180
AcoI	YGGCCR	2 cut(s)	322, 387
AcyI	GRCGYC	1 cut(s)	477
AdeI	CACNNNGTG	1 cut(s)	961
AfaI	GTAC	2 cut(s)	715, 744
AfiI	CCNNNNNNNGG	4 cut(s)	123, 169, 654, 755
AflIII	ACRYGT	2 cut(s)	86, 502
AgsI	TTSAA	4 cut(s)	349, 500, 820, 857
AhlI	ACTAGT	1 cut(s)	998
AjnI	CCWGG	2 cut(s)	653, 849
AluBI	AGCT	8 cut(s)	76, 310, 319, 400, 550, 753, 784, 907
AluI	AGCT	8 cut(s)	76, 310, 319, 400, 550, 753, 784, 907
Alw21I	GWGCWC	3 cut(s)	552, 662, 957
Alw26I	GTCTC	1 cut(s)	974
Alw44I	GTGCAC	1 cut(s)	953
AlwI	GGATC	2 cut(s)	64, 180
AoxI	GGCC	4 cut(s)	125, 160, 322, 387
ApaI	GGGCCC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	953
ApeKI	GCWGC	5 cut(s)	135, 287, 400, 530, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	126, 160, 161, 917
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	3 cut(s)	325, 439, 818
AvaII	GGWCC	1 cut(s)	917
AxyI	CCTNAGG	1 cut(s)	686
BaeGI	GKGCMC	2 cut(s)	164, 957
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	164, 552
BarI	GAAGNNNNNNTAC	2 cut(s)	894, 926
Bbv12I	GWGCWC	3 cut(s)	552, 662, 957
BbvCI	CCTCAGC	1 cut(s)	404
BbvI	GCAGC	5 cut(s)	147, 299, 387, 517, 976
BccI	CCATC	3 cut(s)	258, 333, 373
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	655, 851
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	974
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	3 cut(s)	573, 633, 999
BfuI	GTATCC	1 cut(s)	856
BisI	GCNGC	9 cut(s)	136, 282, 285, 288, 325, 401, 531, 732, 965
BlsI	GCNGC	9 cut(s)	137, 283, 286, 289, 326, 402, 532, 733, 966
Bme1390I	CCNGG	3 cut(s)	494, 655, 851
Bme18I	GGWCC	1 cut(s)	917
BmgT120I	GGNCC	4 cut(s)	126, 160, 161, 917
BmiI	GGNNCC	2 cut(s)	162, 163
BmrFI	CCNGG	3 cut(s)	494, 655, 851
BoxI	GACNNNNGTC	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	2 cut(s)	812, 875
BpuMI	CCSGG	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	653, 840
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 169, 654, 755
Bse21I	CCTNAGG	1 cut(s)	686
BseBI	CCWGG	2 cut(s)	655, 851
BseDI	CCNNGG	2 cut(s)	653, 840
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	4 cut(s)	123, 169, 654, 755
BseMII	CTCAG	2 cut(s)	395, 654
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	2 cut(s)	164, 957
BseX3I	CGGCCG	1 cut(s)	322
BseXI	GCAGC	5 cut(s)	147, 299, 387, 517, 976
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	1 cut(s)	983
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	3 cut(s)	221, 279, 325
BshFI	GGCC	4 cut(s)	127, 162, 324, 389
BsiEI	CGRYCG	3 cut(s)	221, 279, 325
BsiHKAI	GWGCWC	3 cut(s)	552, 662, 957
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	4 cut(s)	123, 169, 654, 755
BsmAI	GTCTC	1 cut(s)	974
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	4 cut(s)	127, 162, 324, 389
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	4 cut(s)	164, 552, 662, 957
Bsp143I	GATC	4 cut(s)	69, 172, 507, 613
BspACI	CCGC	8 cut(s)	165, 282, 285, 325, 383, 422, 608, 731
BspANI	GGCC	4 cut(s)	127, 162, 324, 389
BspCNI	CTCAG	2 cut(s)	396, 655
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	162, 163
BspPI	GGATC	2 cut(s)	64, 180
BspQI	GCTCTTC	1 cut(s)	897
BsrBI	CCGCTC	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	653, 840
BssMI	GATC	4 cut(s)	69, 172, 507, 613
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	2 cut(s)	655, 851
Bst4CI	ACNGT	2 cut(s)	222, 277
Bst6I	CTCTTC	2 cut(s)	338, 897
BstACI	GRCGYC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	961
BstC8I	GCNNGC	4 cut(s)	372, 420, 770, 947
BstDEI	CTNAG	3 cut(s)	404, 663, 686
BstENI	CCTNNNNNAGG	2 cut(s)	121, 652
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	72, 175, 510, 616
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	4 cut(s)	69, 172, 507, 613
BstMCI	CGRYCG	3 cut(s)	221, 279, 325
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 316, 380, 439, 961
BstNI	CCWGG	2 cut(s)	655, 851
BstNSI	RCATGY	3 cut(s)	506, 772, 949
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	3 cut(s)	492, 653, 849
BstSLI	GKGCMC	2 cut(s)	164, 957
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	5 cut(s)	147, 299, 387, 517, 976
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	4 cut(s)	127, 162, 324, 389
BtgZI	GCGATG	2 cut(s)	433, 571
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	19, 480
Cac8I	GCNNGC	4 cut(s)	372, 420, 770, 947
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	4 cut(s)	126, 160, 161, 917
CseI	GACGC	1 cut(s)	485
CsiI	ACCWGGT	1 cut(s)	849
Csp6I	GTAC	2 cut(s)	714, 743
CviAII	CATG	5 cut(s)	271, 503, 769, 921, 946
CviQI	GTAC	2 cut(s)	714, 743
DdeI	CTNAG	3 cut(s)	404, 663, 686
DpnI	GATC	4 cut(s)	71, 174, 509, 615
DpnII	GATC	4 cut(s)	69, 172, 507, 613
DraIII	CACNNNGTG	1 cut(s)	961
EaeI	YGGCCR	2 cut(s)	322, 387
EagI	CGGCCG	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	338, 897
EarI	CTCTTC	2 cut(s)	338, 897
EciI	GGCGGA	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	550
EclXI	CGGCCG	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	840
Eco24I	GRGCYC	2 cut(s)	164, 552
Eco47I	GGWCC	1 cut(s)	917
Eco52I	CGGCCG	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	550
Eco81I	CCTNAGG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	550
EcoNI	CCTNNNNNAGG	2 cut(s)	121, 652
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	653, 849
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	2 cut(s)	164, 552
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	5 cut(s)	274, 506, 772, 924, 949
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	5 cut(s)	270, 502, 768, 920, 945
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	9 cut(s)	136, 282, 285, 288, 325, 401, 531, 732, 965
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	2 cut(s)	164, 552
Fsp4HI	GCNGC	9 cut(s)	136, 282, 285, 288, 325, 401, 531, 732, 965
FspBI	CTAG	3 cut(s)	573, 633, 999
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	9 cut(s)	136, 282, 285, 288, 325, 401, 531, 732, 965
GsaI	CCCAGC	1 cut(s)	753
HaeIII	GGCC	4 cut(s)	127, 162, 324, 389
HapII	CCGG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	274, 506, 772, 924, 949
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	6 cut(s)	56, 345, 489, 667, 763, 872
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	3 cut(s)	325, 439, 818
Hpy166II	GTNNAC	1 cut(s)	955
Hpy188I	TCNGA	4 cut(s)	338, 664, 871, 877
Hpy188III	TCNNGA	3 cut(s)	473, 573, 671
Hpy8I	GTNNAC	1 cut(s)	955
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	222, 277
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	6 cut(s)	135, 363, 370, 924, 955, 964
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 316, 380, 439, 961
HpyF3I	CTNAG	3 cut(s)	404, 663, 686
HpySE526I	ACGT	1 cut(s)	745
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	274, 506, 772, 924, 949
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	69, 172, 507, 613
LguI	GCTCTTC	1 cut(s)	897
Lsp1109I	GCAGC	5 cut(s)	147, 299, 387, 517, 976
MabI	ACCWGGT	1 cut(s)	849
MaeI	CTAG	3 cut(s)	573, 633, 999
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	2 cut(s)	265, 443
MalI	GATC	4 cut(s)	71, 174, 509, 615
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	4 cut(s)	69, 172, 507, 613
MboII	GAAGA	5 cut(s)	51, 325, 388, 914, 996
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	4 cut(s)	164, 552, 662, 957
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	6 cut(s)	130, 184, 209, 560, 678, 925
MluI	ACGCGT	1 cut(s)	86
MluNI	TGGCCA	1 cut(s)	389
MnlI	CCTC	7 cut(s)	163, 399, 408, 432, 658, 836, 978
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	2 cut(s)	224, 638
MslI	CAYNNNNRTG	2 cut(s)	358, 950
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	753
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	3 cut(s)	494, 655, 851
MunI	CAATTG	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	655, 851
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	287, 316, 380, 439, 961
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	4 cut(s)	69, 172, 507, 613
NlaIII	CATG	5 cut(s)	274, 506, 772, 924, 949
NlaIV	GGNNCC	2 cut(s)	162, 163
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	265, 443
NspI	RCATGY	3 cut(s)	506, 772, 949
PaeI	GCATGC	2 cut(s)	772, 949
PciI	ACATGT	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	897
PfeI	GAWTC	6 cut(s)	56, 345, 489, 667, 763, 872
PkrI	GCNGC	9 cut(s)	137, 283, 286, 289, 326, 402, 532, 733, 966
PscI	ACATGT	1 cut(s)	502
PshAI	GACNNNNGTC	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	653, 849
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	2 cut(s)	653, 849
PspN4I	GGNNCC	2 cut(s)	162, 163
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	126, 160, 161, 917
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	753
RsaI	GTAC	2 cut(s)	715, 744
RsaNI	GTAC	2 cut(s)	714, 743
RseI	CAYNNNNRTG	2 cut(s)	358, 950
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	2 cut(s)	224, 638
SatI	GCNGC	9 cut(s)	136, 282, 285, 288, 325, 401, 531, 732, 965
Sau3AI	GATC	4 cut(s)	69, 172, 507, 613
Sau96I	GGNCC	4 cut(s)	126, 160, 161, 917
ScrFI	CCNGG	3 cut(s)	494, 655, 851
SduI	GDGCHC	4 cut(s)	164, 552, 662, 957
SexAI	ACCWGGT	1 cut(s)	849
SinI	GGWCC	1 cut(s)	917
SmiMI	CAYNNNNRTG	2 cut(s)	358, 950
SmlI	CTYRAG	2 cut(s)	827, 890
SmoI	CTYRAG	2 cut(s)	827, 890
SpeI	ACTAGT	1 cut(s)	998
SphI	GCATGC	2 cut(s)	772, 949
Sse9I	AATT	6 cut(s)	130, 184, 209, 560, 678, 925
SsiI	CCGC	8 cut(s)	165, 282, 285, 325, 383, 422, 608, 731
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	3 cut(s)	573, 633, 999
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	492, 653, 849
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	222, 277
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	1 cut(s)	487
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	130, 184, 209, 560, 678, 925
TauI	GCSGC	4 cut(s)	284, 287, 327, 734
TfiI	GAWTC	6 cut(s)	56, 345, 489, 667, 763, 872
Tru1I	TTAA	2 cut(s)	224, 638
Tru9I	TTAA	2 cut(s)	224, 638
TscAI	CASTG	2 cut(s)	19, 487
TseFI	GTSAC	2 cut(s)	265, 443
TseI	GCWGC	5 cut(s)	135, 287, 400, 530, 964
Tsp45I	GTSAC	2 cut(s)	265, 443
TspDTI	ATGAA	1 cut(s)	532
TspRI	CASTG	2 cut(s)	19, 487
VneI	GTGCAC	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	917
XagI	CCTNNNNNAGG	2 cut(s)	121, 652
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	3 cut(s)	506, 772, 949
XspI	CTAG	3 cut(s)	573, 633, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.