Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

2908711 .. 2909532

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGATTGACAAACTCTCTGTTAGAACTCCTATGGGTGAAGTAAAGTTGGAACTCCTGAAGGAGATAGCCAAGGAATACCAGGTTGAGTGGGATACATTGGAATCTGAACAGGAGCTGCTCAAGCGTCCAGAAGAGCTTACACAAGGACCGCGCAATTTTGTTAGTACTACCAGCAAGCCTGTGCACAGTGTGCAGCCTCAACCTGTTGAGACTAATGAACCAAACACTAGTTCTTTGTGCATGACAAGTAGTGGGGGTGAAAGAGGACATATGCAGTTTGTAGACTCAGCATCAGCTGCTGAAGTAGTTATAAAATCTGCCAGTGATGCAATGGCTGCTGCAGAAGTTGCTGCATATTTGGGCAACAAAGACTGCAATCAGGACATTGATATTGTATCTCTCAAGAATTACATGGCTGCAAAGATGTTAGAAGCCATAATTAGAAACTTGAAAGAGATAACTTTCAGGGAATGGGAATGGCAGTGCTCAACCTATGATATTCAGGTAGCAAATGTGTCGATTGGAGCTTATGCTGAACAGGGAATGCTAGGGGAGACCAAGGAGCTTGTTCCTGGTGACATTGTGAAGCCTAAGGTTGGGGATAAGGGGGCCGCTGATATGCGTGTTGTGGAATTCATTTGCTCAACTTTGAGGGTGGAGCAAGGTTCATTGACCGGGGAGAGTGAGGCAGTGAATAAGACTAACAAGCCAATCTCTGAGGACACAGATTCAGGGGAAGAAAAGTATGGTTTTCACTGGGCCGATTGTTGTGAATGGGAATTGCCTATGCTTGGTTGCAGAGACAGGAATGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

274

Amino Acids

30.28

Weight (kDa)

4.63

Isoelectric Point (pI)

25.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	187 - 237	4.5e-07	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AasI	GACNNNNNNGTC	1 cut(s)	812
AccI	GTMKAC	2 cut(s)	285, 816
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	152, 615
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	2 cut(s)	80, 324
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	599, 794
AgsI	TTSAA	1 cut(s)	454
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	81, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	5 cut(s)	118, 139, 299, 530, 568
AluI	AGCT	5 cut(s)	118, 139, 299, 530, 568
Alw21I	GWGCWC	2 cut(s)	189, 491
Alw26I	GTCTC	3 cut(s)	206, 551, 798
Alw44I	GTGCAC	1 cut(s)	185
AlwNI	CAGNNNCTG	2 cut(s)	118, 302
AoxI	GGCC	2 cut(s)	612, 762
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	7 cut(s)	118, 196, 299, 338, 341, 353, 419
ApoI	RAATTY	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	149, 612, 762
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	3 cut(s)	50, 272, 590
AvaII	GGWCC	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	189, 491
BbvI	GCAGC	7 cut(s)	105, 208, 286, 325, 328, 340, 406
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BciT130I	CCWGG	2 cut(s)	83, 576
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	3 cut(s)	206, 551, 798
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	2 cut(s)	231, 551
BfmI	CTRYAG	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	8 cut(s)	119, 197, 300, 339, 342, 354, 420, 615
BlsI	GCNGC	8 cut(s)	120, 198, 301, 340, 343, 355, 421, 616
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	3 cut(s)	83, 576, 679
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	3 cut(s)	149, 612, 762
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	3 cut(s)	83, 576, 679
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	2 cut(s)	302, 319
BmuI	ACTGGG	1 cut(s)	769
BpuEI	CTTGAG	2 cut(s)	107, 389
BpuMI	CCSGG	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	72, 561, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 794
Bse1I	ACTGG	2 cut(s)	324, 764
Bse21I	CCTNAGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	83, 576
BseDI	CCNNGG	3 cut(s)	72, 561, 678
BseLI	CCNNNNNNNGG	2 cut(s)	599, 794
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	303, 711
BseNI	ACTGG	2 cut(s)	324, 764
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	7 cut(s)	105, 208, 286, 325, 328, 340, 406
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	614, 764
BsiHKAI	GWGCWC	2 cut(s)	189, 491
BsiSI	CCGG	1 cut(s)	678
BslI	CCNNNNNNNGG	2 cut(s)	599, 794
BsmAI	GTCTC	3 cut(s)	206, 551, 798
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	614, 764
Bso31I	GGTCTC	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	189, 491
BspACI	CCGC	2 cut(s)	152, 615
BspANI	GGCC	2 cut(s)	614, 764
BspCNI	CTCAG	2 cut(s)	302, 712
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	613
BspMAI	CTGCAG	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	324, 764
BssECI	CCNNGG	3 cut(s)	72, 561, 678
BssT1I	CCWWGG	2 cut(s)	72, 561
Bst2UI	CCWGG	2 cut(s)	83, 576
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	4 cut(s)	193, 299, 338, 350
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	289, 594, 720
BstFNI	CGCG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	3 cut(s)	206, 551, 798
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 193, 299, 329, 338, 350
BstNI	CCWGG	2 cut(s)	83, 576
BstSCI	CCNGG	3 cut(s)	81, 574, 677
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	189
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	7 cut(s)	105, 208, 286, 325, 328, 340, 406
Bsu36I	CCTNAGG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	614, 764
BtsI	GCAGTG	2 cut(s)	491, 699
BtsIMutI	CAGTG	5 cut(s)	196, 331, 491, 699, 757
Cac8I	GCNNGC	1 cut(s)	179
CaiI	CAGNNNCTG	2 cut(s)	118, 302
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	149, 612, 762
CseI	GACGC	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	244, 415
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	3 cut(s)	289, 594, 720
DraIII	CACNNNGTG	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	812
DseDI	GACNNNNNNGTC	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	2 cut(s)	72, 561
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	80, 324
Eco81I	CCTNAGG	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	81, 574
EcoT14I	CCWWGG	2 cut(s)	72, 561
ErhI	CCWWGG	2 cut(s)	72, 561
FaeI	CATG	2 cut(s)	247, 418
FatI	CATG	2 cut(s)	243, 414
FauNDI	CATATG	1 cut(s)	273
FblI	GTMKAC	2 cut(s)	285, 816
Fnu4HI	GCNGC	8 cut(s)	119, 197, 300, 339, 342, 354, 420, 615
Fsp4HI	GCNGC	8 cut(s)	119, 197, 300, 339, 342, 354, 420, 615
FspBI	CTAG	2 cut(s)	231, 551
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	8 cut(s)	119, 197, 300, 339, 342, 354, 420, 615
HaeIII	GGCC	2 cut(s)	614, 764
HapII	CCGG	1 cut(s)	678
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	247, 418
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HinfI	GANTC	3 cut(s)	104, 287, 731
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	3 cut(s)	50, 272, 590
Hpy166II	GTNNAC	3 cut(s)	187, 286, 817
Hpy188I	TCNGA	2 cut(s)	109, 721
Hpy188III	TCNNGA	4 cut(s)	58, 131, 383, 406
Hpy8I	GTNNAC	3 cut(s)	187, 286, 817
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 193, 299, 329, 338, 350
HpyF3I	CTNAG	3 cut(s)	289, 594, 720
Hsp92II	CATG	2 cut(s)	247, 418
HspAI	GCGC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	4 cut(s)	115, 527, 565, 661
Lsp1109I	GCAGC	7 cut(s)	105, 208, 286, 325, 328, 340, 406
LweI	GCATC	2 cut(s)	302, 319
MabI	ACCWGGT	1 cut(s)	81
MaeI	CTAG	2 cut(s)	231, 551
MaeIII	GTNAC	1 cut(s)	578
MboII	GAAGA	2 cut(s)	146, 752
MhlI	GDGCHC	2 cut(s)	189, 491
MluCI	AATT	5 cut(s)	157, 409, 441, 635, 782
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	210, 260, 648, 682, 715
MspA1I	CMGCKG	2 cut(s)	299, 617
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	3 cut(s)	83, 576, 679
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	2 cut(s)	83, 576
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	6 cut(s)	124, 193, 299, 329, 338, 350
NciI	CCSGG	1 cut(s)	679
NdeI	CATATG	1 cut(s)	273
NlaIII	CATG	2 cut(s)	247, 418
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	104, 731
PkrI	GCNGC	8 cut(s)	120, 198, 301, 340, 343, 355, 421, 616
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	81, 574
PspGI	CCWGG	2 cut(s)	81, 574
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	3 cut(s)	149, 612, 762
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	118, 302
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	129
SatI	GCNGC	8 cut(s)	119, 197, 300, 339, 342, 354, 420, 615
Sau96I	GGNCC	3 cut(s)	149, 612, 762
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	83, 576, 679
SduI	GDGCHC	2 cut(s)	189, 491
SexAI	ACCWGGT	1 cut(s)	81
SfaNI	GCATC	2 cut(s)	302, 319
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	122, 404
SmoI	CTYRAG	2 cut(s)	122, 404
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	5 cut(s)	157, 409, 441, 635, 782
SsiI	CCGC	2 cut(s)	152, 615
SspMI	CTAG	2 cut(s)	231, 551
StyD4I	CCNGG	3 cut(s)	81, 574, 677
StyI	CCWWGG	2 cut(s)	72, 561
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	521, 816
TasI	AATT	5 cut(s)	157, 409, 441, 635, 782
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	2 cut(s)	104, 731
TscAI	CASTG	5 cut(s)	196, 331, 491, 699, 764
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	7 cut(s)	118, 196, 299, 338, 341, 353, 419
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	234, 628, 660
TspRI	CASTG	5 cut(s)	196, 331, 491, 699, 764
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmiI	GTMKAC	2 cut(s)	285, 816
XspI	CTAG	2 cut(s)	231, 551
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.