Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8137744.1

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 637

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8137744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

gttatattctacgagcaagattggaatccccaggttgataagcaagctttgcagcgggcacacaggattggtcaattaaattctgtgctgtcaataaacctagttaccggacgtacagtggaggaggttatcatgcggagagcagaaaggaagttgcagcttagccataatgttattggggatgatgttatggacgaggaaggtaaagagacagcaggagttgaacctagtgacctgcgatctatcatatttgggttacatctgtttgatcctgctgaagtcaacaatagtgagtgtgagatttcagaattggatgctttggccgagaaggcgatttcagtgcgcaataaagaaacagcaaccaaggatgagaggaaatttgaggtcggtccaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

132

Amino Acids

14.89

Weight (kDa)

4.81

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	243
AciI	CCGC	2 cut(s)	55, 136
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	79, 377
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	47, 160
AluI	AGCT	2 cut(s)	47, 160
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	52, 157
ApoI	RAATTY	2 cut(s)	79, 377
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	64, 169
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	101, 228
BfuAI	ACCTGC	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	2 cut(s)	53, 158
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	2 cut(s)	54, 159
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	304
Bpu1102I	GCTNAGC	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	30, 363
BsaWI	WCCGGW	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	30, 363
BseGI	GGATG	3 cut(s)	187, 319, 373
BseJI	GATNNNNATC	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	64, 169
BshFI	GGCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	239, 268
Bsp1720I	GCTNAGC	1 cut(s)	161
BspACI	CCGC	2 cut(s)	55, 136
BspANI	GGCC	1 cut(s)	323
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	30, 363
BssMI	GATC	2 cut(s)	239, 268
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	45, 57
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	187, 319, 373
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	242, 271
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	239, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 329
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	64, 169
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	187, 319, 373
BtsIMutI	CAGTG	2 cut(s)	123, 345
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	45, 57
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	4 cut(s)	47, 160, 165, 323
CviKI_1	RGCY	4 cut(s)	47, 160, 165, 323
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	241, 270
DpnII	GATC	2 cut(s)	239, 268
EaeI	YGGCCR	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	136
FaiI	YATR	5 cut(s)	5, 134, 168, 191, 248
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	53, 158
FokI	GGATG	3 cut(s)	194, 326, 380
Fsp4HI	GCNGC	2 cut(s)	53, 158
FspBI	CTAG	2 cut(s)	101, 228
FspI	TGCGCA	1 cut(s)	344
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	53, 158
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	194, 322
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	52, 157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 329
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	239, 268
LpnPI	CCDG	7 cut(s)	17, 44, 49, 121, 201, 248, 285
Lsp1109I	GCAGC	2 cut(s)	64, 169
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	101, 228
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	3 cut(s)	103, 230, 255
MalI	GATC	2 cut(s)	241, 270
MboI	GATC	2 cut(s)	239, 268
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	74, 79, 308, 377
MnlI	CCTC	5 cut(s)	115, 118, 190, 366, 376
MseI	TTAA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	49, 329
NdeII	GATC	2 cut(s)	239, 268
NlaIII	CATG	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	230
NsbI	TGCGCA	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	54, 159
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	53, 158
Sau3AI	GATC	2 cut(s)	239, 268
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	389
Sse9I	AATT	4 cut(s)	74, 79, 308, 377
SsiI	CCGC	2 cut(s)	55, 136
SspMI	CTAG	2 cut(s)	101, 228
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	115
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	4 cut(s)	74, 79, 308, 377
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	2 cut(s)	123, 345
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	52, 157
Tsp45I	GTSAC	1 cut(s)	230
TspRI	CASTG	2 cut(s)	123, 345
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	79, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XspI	CTAG	2 cut(s)	101, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.