Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

12844488 .. 12844951

Gene Structure 464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTGCTACTGCAATGGCATTTGGGATAAGGGTGGAGGATCTAAATTCCACAAAATGCAATTGAAGATGGCGGTGGTTCAAATAAAGTTGCTGGGGAACAACAAGGAGGCGGTGGTGAAGCAAATGAGGCGTGAGATTGCCTTCAAAAAAATTTTGACCACCAATGAGTTCATTGAGCTCTTCTGTGAATTAGTAGTATCCAGACTTTCTATCATCGCAAAGCAAGGGGAGTGTCTACTTAATCTCAAAGAGGGAATTGCTAGTTTAATCTTTGCCTCTTCCAGGTATTCTGAGATTTTAGAACTGATCGTTCTAAGGAATATTTTTGAGGAAAAGTATGGTAAAGATTTTGTATCTGCGGCTGTTGATGCACGTCGCAGCTGTGGTGCGAATTGCATGTTGTGGTGTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

139

Amino Acids

15.66

Weight (kDa)

8.86

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	3 cut(s)	71, 110, 359
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	44, 150
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	64, 80, 145
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	178, 381
AluI	AGCT	2 cut(s)	178, 381
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	44, 150
AsuHPI	GGTGA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	360, 379
BlsI	GCNGC	2 cut(s)	361, 380
Bme1390I	CCNGG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	390
BseYI	CCCAGC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	38, 306
BspACI	CCGC	3 cut(s)	71, 110, 359
BspCNI	CTCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	19
BssMI	GATC	2 cut(s)	38, 306
Bst2UI	CCWGG	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	185, 283
BstDEI	CTNAG	2 cut(s)	291, 314
BstENI	CCTNNNNNAGG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	41, 309
BstMBI	GATC	2 cut(s)	38, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 368
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	374
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	3 cut(s)	178, 362, 381
CviKI_1	RGCY	3 cut(s)	178, 362, 381
DdeI	CTNAG	2 cut(s)	291, 314
DpnI	GATC	2 cut(s)	40, 308
DpnII	GATC	2 cut(s)	38, 306
Eam1104I	CTCTTC	2 cut(s)	185, 283
EarI	CTCTTC	2 cut(s)	185, 283
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	1 cut(s)	400
FaiI	YATR	3 cut(s)	339, 398, 415
FatI	CATG	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	360, 379
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	360, 379
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	360, 379
GsaI	CCCAGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	400
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	12, 58, 371, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 368
HpyF3I	CTNAG	2 cut(s)	291, 314
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	38, 306
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	4 cut(s)	77, 214, 268, 295
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	373
MalI	GATC	2 cut(s)	40, 308
MboI	GATC	2 cut(s)	38, 306
MboII	GAAGA	3 cut(s)	76, 172, 270
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	6 cut(s)	44, 59, 150, 188, 255, 391
MnlI	CCTC	6 cut(s)	29, 100, 120, 244, 286, 322
MseI	TTAA	2 cut(s)	240, 266
MspA1I	CMGCKG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	127, 368
NdeII	GATC	2 cut(s)	38, 306
NlaIII	CATG	1 cut(s)	400
NspI	RCATGY	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	361, 380
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	240, 266
SatI	GCNGC	2 cut(s)	360, 379
Sau3AI	GATC	2 cut(s)	38, 306
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	180, 287, 376, 383
SfaNI	GCATC	1 cut(s)	358
Sse9I	AATT	6 cut(s)	44, 59, 150, 188, 255, 391
SsiI	CCGC	3 cut(s)	71, 110, 359
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	281
TaiI	ACGT	1 cut(s)	376
TasI	AATT	6 cut(s)	44, 59, 150, 188, 255, 391
TauI	GCSGC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	240, 266
Tru9I	TTAA	2 cut(s)	240, 266
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	160
XagI	CCTNNNNNAGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	44, 150
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.