Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

14540407 .. 14541846

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGTGAGGGTAGATTTCAATCTCTTGACCAGTTTCCGGCTCGTGAATATTGTATATTTCTTGTTGACAATATAGAAACTAAAGTCAAGTTGAGGGAGGAAGGCTATTCTCAACTCTTTTCTGCAGTGCATAAATTTGCTGATGTGATTTCTGAATTCAACAATATGGTTTCTGCAATTCCAGCGATGGTTATACAGTCGGATGAGGTTAAGCTTAAGTTTGATGAAGGGTCCACAATGAGCAAGCCTTGGATTGTGAATTTGGGTGACAGTGAGAGTCTAGCAAAAACTGAAGTTCAAGGGGAAAACCTTAAGGAAGTTCAAAACATCAAGAAATCTCTTTCAGCTCTTGGGGATGTGATCTCAGCATTGTCAAGAATTAAGGCTTTGATCCGGTTGGGACATGTGGATGAAGAGAATGCCATGGTCATATCCCTGTTTGAGAATCTTGCAGAAGTTCTCTCAAAGGAGGGTATGTCCTTTTTAGTTAGTTGTCAAAACCTTGTACCTCAACCTTGGGTTATCGATGACTTAGACGCGGAAATTGTTGTGTGTGTAAGATCTGCATGCGGGCATTCAGGTGCATTAGACCATGGAAGAACGGTGTACTCTGCCTGCTCTATAAATTCATATGGCAATGAAGCTGTGGTTGCTGAGATTTTGCAGAGAGGTGGTGGGCCTAGCCACAATATTGTGAGAAATGATGCTATGGACCAAGAAGGTAAAGGAACAAATGGAGTTGAGCCTCATGACTTACAACGCATTATATTTGAGTTACCTCTCCTTGATCCCAAGGAAATCAACACTGGTGTGCTTGAGGTGTCTGAACTAAATGCTATGGCTGAGAAGGTAATTGTAGTGCGGAATAAACAAGTAGCTATTGATGGTGAGATGGAATTTGAGCCCAATCCAGTAGATGTTTTGGATGGACATAATTGTGTTGTAGGAGAAAGTTCCGCTTCTCTTAGTTTCAGTTTCTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

329

Amino Acids

36.05

Weight (kDa)

4.63

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	539
AciI	CCGC	4 cut(s)	539, 570, 862, 957
AclWI	GGATC	2 cut(s)	385, 782
AcsI	RAATTY	5 cut(s)	134, 155, 259, 625, 896
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	507, 608
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflII	CTTAAG	2 cut(s)	215, 311
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	20, 160, 299, 323
AleI	CACNNNNGTG	1 cut(s)	809
AluBI	AGCT	4 cut(s)	214, 347, 644, 878
AluI	AGCT	4 cut(s)	214, 347, 644, 878
AlwI	GGATC	2 cut(s)	385, 782
AlwNI	CAGNNNCTG	1 cut(s)	978
AoxI	GGCC	1 cut(s)	677
ApoI	RAATTY	5 cut(s)	134, 155, 259, 625, 896
AspS9I	GGNCC	3 cut(s)	231, 677, 712
AsuHPI	GGTGA	2 cut(s)	278, 899
AvaII	GGWCC	2 cut(s)	231, 712
BanII	GRGCYC	1 cut(s)	906
BauI	CACGAG	1 cut(s)	42
BccI	CCATC	4 cut(s)	181, 878, 886, 920
BfaI	CTAG	2 cut(s)	281, 681
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	2 cut(s)	215, 311
BglII	AGATCT	1 cut(s)	560
Bme18I	GGWCC	2 cut(s)	231, 712
BmgT120I	GGNCC	3 cut(s)	231, 677, 712
BmiI	GGNNCC	1 cut(s)	232
BmsI	GCATC	1 cut(s)	694
BpuEI	CTTGAG	1 cut(s)	836
Bsa29I	ATCGAT	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	19
BsaJI	CCNNGG	5 cut(s)	248, 423, 515, 592, 792
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	31, 811, 911
Bse3DI	GCAATG	1 cut(s)	643
Bse8I	GATNNNNATC	1 cut(s)	19
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	5 cut(s)	248, 423, 515, 592, 792
BseGI	GGATG	4 cut(s)	208, 361, 415, 931
BseJI	GATNNNNATC	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	3 cut(s)	378, 645, 834
BseNI	ACTGG	3 cut(s)	31, 811, 911
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	679
BshVI	ATCGAT	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	38, 394
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	2 cut(s)	424, 574
BsnI	GGCC	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp143I	GATC	4 cut(s)	360, 390, 560, 787
Bsp19I	CCATGG	2 cut(s)	423, 592
BspACI	CCGC	4 cut(s)	539, 570, 862, 957
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	3 cut(s)	377, 646, 835
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	385, 782
BspTI	CTTAAG	2 cut(s)	215, 311
BsrDI	GCAATG	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	31, 811, 911
BssECI	CCNNGG	5 cut(s)	248, 423, 515, 592, 792
BssMI	GATC	4 cut(s)	360, 390, 560, 787
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	5 cut(s)	248, 423, 515, 592, 792
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	198, 272, 604
Bst6I	CTCTTC	1 cut(s)	408
BstAFI	CTTAAG	2 cut(s)	215, 311
BstC8I	GCNNGC	4 cut(s)	245, 568, 572, 616
BstDEI	CTNAG	5 cut(s)	364, 532, 654, 843, 965
BstDSI	CCRYGG	2 cut(s)	423, 592
BstF5I	GGATG	4 cut(s)	208, 361, 415, 931
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	4 cut(s)	363, 393, 563, 790
BstMBI	GATC	4 cut(s)	360, 390, 560, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 650
BstNSI	RCATGY	2 cut(s)	407, 570
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	679
BsuTUI	ATCGAT	1 cut(s)	525
BtgI	CCRYGG	2 cut(s)	423, 592
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	4 cut(s)	208, 361, 415, 931
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 277, 804
Cac8I	GCNNGC	4 cut(s)	245, 568, 572, 616
CaiI	CAGNNNCTG	1 cut(s)	978
CciI	TCATGA	1 cut(s)	748
Cfr13I	GGNCC	3 cut(s)	231, 677, 712
ClaI	ATCGAT	1 cut(s)	525
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	506, 607
CviAII	CATG	5 cut(s)	404, 424, 567, 593, 749
CviQI	GTAC	2 cut(s)	506, 607
DdeI	CTNAG	5 cut(s)	364, 532, 654, 843, 965
DpnI	GATC	4 cut(s)	362, 392, 562, 789
DpnII	GATC	4 cut(s)	360, 390, 560, 787
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	5 cut(s)	248, 423, 515, 592, 792
Eco24I	GRGCYC	1 cut(s)	906
Eco47I	GGWCC	2 cut(s)	231, 712
Eco57I	CTGAAG	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	5 cut(s)	248, 423, 515, 592, 792
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	5 cut(s)	248, 423, 515, 592, 792
FaeI	CATG	5 cut(s)	407, 427, 570, 596, 752
FalI	AAGNNNNNCTT	2 cut(s)	943, 975
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	5 cut(s)	403, 423, 566, 592, 748
FauI	CCCGC	1 cut(s)	563
FauNDI	CATATG	1 cut(s)	631
FokI	GGATG	4 cut(s)	215, 368, 422, 938
FriOI	GRGCYC	1 cut(s)	906
FspBI	CTAG	2 cut(s)	281, 681
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	2 cut(s)	38, 394
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	5 cut(s)	407, 427, 570, 596, 752
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	277, 445
HpaII	CCGG	2 cut(s)	38, 394
HphI	GGTGA	2 cut(s)	278, 899
Hpy166II	GTNNAC	3 cut(s)	67, 234, 607
Hpy188I	TCNGA	3 cut(s)	154, 202, 826
Hpy188III	TCNNGA	5 cut(s)	26, 44, 331, 375, 749
Hpy8I	GTNNAC	3 cut(s)	67, 234, 607
HpyAV	CCTTC	4 cut(s)	95, 221, 713, 841
HpyCH4III	ACNGT	3 cut(s)	198, 272, 604
HpyCH4V	TGCA	7 cut(s)	125, 130, 176, 452, 566, 584, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 650
HpyF3I	CTNAG	5 cut(s)	364, 532, 654, 843, 965
Hsp92II	CATG	5 cut(s)	407, 427, 570, 596, 752
Kzo9I	GATC	4 cut(s)	360, 390, 560, 787
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	2 cut(s)	281, 681
MaeIII	GTNAC	2 cut(s)	266, 774
MalI	GATC	4 cut(s)	362, 392, 562, 789
MboI	GATC	4 cut(s)	360, 390, 560, 787
MboII	GAAGA	2 cut(s)	425, 609
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	906
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	87, 91, 199, 463, 519, 662, 756, 789, 811
MseI	TTAA	4 cut(s)	210, 216, 312, 381
MslI	CAYNNNNRTG	4 cut(s)	408, 579, 809, 936
MspCI	CTTAAG	2 cut(s)	215, 311
MspI	CCGG	2 cut(s)	38, 394
Mva1269I	GAATGC	2 cut(s)	424, 574
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	182, 650
NcoI	CCATGG	2 cut(s)	423, 592
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	4 cut(s)	360, 390, 560, 787
NlaIII	CATG	5 cut(s)	407, 427, 570, 596, 752
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	2 cut(s)	407, 570
OliI	CACNNNNGTG	1 cut(s)	809
PaeI	GCATGC	1 cut(s)	570
PagI	TCATGA	1 cut(s)	748
PciI	ACATGT	1 cut(s)	403
PctI	GAATGC	2 cut(s)	424, 574
PfeI	GAWTC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	231, 677, 712
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	978
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	2 cut(s)	507, 608
RsaNI	GTAC	2 cut(s)	506, 607
RseI	CAYNNNNRTG	4 cut(s)	408, 579, 809, 936
SaqAI	TTAA	4 cut(s)	210, 216, 312, 381
Sau3AI	GATC	4 cut(s)	360, 390, 560, 787
Sau96I	GGNCC	3 cut(s)	231, 677, 712
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	906
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	231, 712
SmiMI	CAYNNNNRTG	4 cut(s)	408, 579, 809, 936
SmlI	CTYRAG	3 cut(s)	215, 311, 815
SmoI	CTYRAG	3 cut(s)	215, 311, 815
SphI	GCATGC	1 cut(s)	570
SsiI	CCGC	4 cut(s)	539, 570, 862, 957
SspI	AATATT	2 cut(s)	50, 691
SspMI	CTAG	2 cut(s)	281, 681
StyI	CCWWGG	5 cut(s)	248, 423, 515, 592, 792
TaaI	ACNGT	3 cut(s)	198, 272, 604
TaqI	TCGA	1 cut(s)	525
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	4 cut(s)	210, 216, 312, 381
Tru9I	TTAA	4 cut(s)	210, 216, 312, 381
TscAI	CASTG	3 cut(s)	132, 277, 811
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	240, 426, 618, 654
TspRI	CASTG	3 cut(s)	132, 277, 811
Vha464I	CTTAAG	2 cut(s)	215, 311
VpaK11BI	GGWCC	2 cut(s)	231, 712
XapI	RAATTY	5 cut(s)	134, 155, 259, 625, 896
XceI	RCATGY	2 cut(s)	407, 570
XspI	CTAG	2 cut(s)	281, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.