pycom06g01650

Aminotransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
1782180 .. 1784640
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01650.3

Sequence Viewer

Length: 1746 bp
ATGAGGCGTGACATCGCCTTGCTCCTACAATCTGGTCATGATATCTGGGTTGAACATGTGTTTAGAGCACAAAAAATTTTGACTGCCAATGAGTTCATTGAGCTCTTCTATGAATTAGTAGTATCTAGACTTTTTATCATCGCAAAGCAAAGGGAGTGTCTGTCTAATCTCAAAGAGGGAATTGCTAGTTTAATCTTTGCCTCTTCCAGGTGTTCTGAGATTTTGGAACCGATCGCACTAAGGAATATTTTTGAGGAAAAGTATGGTAAAGGTTTTGTATCTGCAGCTGTTGATGTACGTCCTGGCTGTGGTGCTAATCGCATGCTGTGGTGTGAAATAGGACATATGCAGTTTGTAGACTCAGCATTAGCTGCTGAAGCAGCTACAAATTCTGCCAGTGATGCAATGGCTGCTGCACAAGTTGCTGCATATTTGGCCAACGCAGACTGTAATCAGGAAAAAAAAACTTTTCTTAGGCCCTTGGCTGATTCTCAAGACATTGATATTGTATCTCTCAAGAAAATCAAAGTAACTTCCCTGTTGAGTTTGATAATTTCTTTACGATCAATATGTGAGGGCAAATTTCAATATCTTGACCAGTTTCTATGTTGTGAATATTGTATATCTCTTGCTGACAATATAGAAAGTAAAGTAAAGTTATGGGAGGAAGACTATTGTCAACTCTTTTCTGAAGCACATAAATTTGCTGATGTGATTTCCGACTTCAACAATATGGTTTATGCAATTCCAGCGATGGTTACACAGTCTGATGAACTTAAGCTTAAGTTTGATGAAGGGTCCACAATGAACAAGCTTTGGATTATGAATTTGGGTGGCAGTGAGAGTCTAGCAAAAACTGAAGTTCAAGGAGAAAGCCTTAAGGAAGCTCAAAACATCAATAAATCTCCTTCAGTTCTTGGGGATGTGATCGATCAGCTTTTGGACCTTAGTGATGCTATTGAAGATGAGGTCAAGTGGGTAGAGAATCTGATTAGAGGAGTATTTGCTGGGAATATATTTGATCTTGGTTATGCACAGCTTGCAGAAGTTATCGATAACTTGGACACTGCAATGGTTGTGTGCGTAAGATCTGCGTACGGGCATTCGAGTGCCTTATACCATGGAATAATGGTGTACTCTACTTGCTCTATAAATTCACTTGAAAATGAAGTTGTGGTTGCTGAGATTTTGCGGAGAGGGGGTGGGCCTAGCCATAATGTTGTGAGAAATGATGTTATGGACCAAGAAAGTAAAGGAACAAATGGAGTTAAGCCTCGTGACTCACGACACATTATATTTGAGTTACCTCTCCTTGATCTTGAGGAAGTCAACAATGGTGTGCTTGAGTTGTCTGAACTAAATGCTATGGTTGAGAAGGTAATTTCAGTGTGGAATAAACAAGTAGCTATTGATGGTGAGATGAAATTTGAGCACAATCTAGCAGATGTTTTGGATGGACCTGATTTTGTTGTAGGAAAAAGTTCCAGTTCTCTTAGTTTCAGTTCTGGTTTTGATGAATCTTCATCTCTCTCTTGCGATGAAAAATTTGAGGAGGTGTCACAAGAAAATTATGGAGAGGCTACAAAAAACAAGAACTCACTTGCCCAGTTCAAGCGAGATGCCATACCTGGAAGGATTATAATGATTTCAAATTCAAGGGGGAAGTATTGTTATGAACCCAAATTATTACTGAGGTTTTATGCTTTATTACCATTAGGAATTGTTAATATGCCAGCTGGCATTTAA

Protein Analysis

582

Amino Acids

64.47

Weight (kDa)

4.82

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1640
AccI GTMKAC 1 cut(s) 357
AciI CCGC 1 cut(s) 1192
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 9 cut(s) 75, 388, 581, 701, 826, 1153, 1424, 1544, 1651
AcuI CTGAAG 4 cut(s) 396, 711, 879, 894
AfaI GTAC 3 cut(s) 297, 1097, 1136
AfiI CCNNNNNNNGG 2 cut(s) 207, 308
AflII CTTAAG 3 cut(s) 776, 782, 878
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 9 cut(s) 53, 587, 727, 866, 962, 1163, 1612, 1650, 1656
AjnI CCWGG 3 cut(s) 206, 301, 1627
Alw21I GWGCWC 3 cut(s) 70, 105, 1434
AoxI GGCC 3 cut(s) 435, 476, 1205
ApeKI GCWGC 6 cut(s) 284, 371, 380, 410, 413, 425
ApoI RAATTY 9 cut(s) 75, 388, 581, 701, 826, 1153, 1424, 1544, 1651
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
Asp700I GAANNNNTTC 1 cut(s) 1480
AspS9I GGNCC 6 cut(s) 477, 798, 943, 1205, 1240, 1457
AsuHPI GGTGA 1 cut(s) 1427
AvaII GGWCC 4 cut(s) 798, 943, 1240, 1457
BalI TGGCCA 1 cut(s) 437
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 1275
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 3 cut(s) 70, 105, 1434
BbvI GCAGC 6 cut(s) 296, 358, 392, 397, 400, 412
BccI CCATC 3 cut(s) 748, 1406, 1448
BciT130I CCWGG 3 cut(s) 208, 303, 1629
BfaI CTAG 5 cut(s) 126, 186, 848, 1209, 1439
BfmI CTRYAG 1 cut(s) 282
BfrI CTTAAG 3 cut(s) 776, 782, 878
BglII AGATCT 1 cut(s) 1088
BisI GCNGC 6 cut(s) 285, 372, 381, 411, 414, 426
BlsI GCNGC 6 cut(s) 286, 373, 382, 412, 415, 427
Bme1390I CCNGG 3 cut(s) 208, 303, 1629
Bme18I GGWCC 4 cut(s) 798, 943, 1240, 1457
BmgT120I GGNCC 6 cut(s) 477, 798, 943, 1205, 1240, 1457
BmiI GGNNCC 2 cut(s) 228, 799
BmrFI CCNGG 3 cut(s) 208, 303, 1629
BmrI ACTGGG 1 cut(s) 1600
BmsI GCATC 3 cut(s) 391, 943, 1609
BmuI ACTGGG 1 cut(s) 1600
BoxI GACNNNNGTC 1 cut(s) 675
BpiI GAAGAC 1 cut(s) 675
BpuEI CTTGAG 4 cut(s) 477, 500, 1340, 1364
Bsa29I ATCGAT 2 cut(s) 930, 1053
BsaJI CCNNGG 2 cut(s) 480, 1120
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 1186, 1216
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 308
Bse1I ACTGG 4 cut(s) 396, 598, 1485, 1606
Bse3DI GCAATG 2 cut(s) 411, 1077
BseBI CCWGG 3 cut(s) 208, 303, 1629
BseCI ATCGAT 2 cut(s) 930, 1053
BseDI CCNNGG 2 cut(s) 480, 1120
BseGI GGATG 2 cut(s) 928, 1459
BseLI CCNNNNNNNGG 2 cut(s) 207, 308
BseMI GCAATG 2 cut(s) 411, 1077
BseMII CTCAG 4 cut(s) 207, 375, 1173, 1682
BseNI ACTGG 4 cut(s) 396, 598, 1485, 1606
BseRI GAGGAG 2 cut(s) 1011, 1565
BseXI GCAGC 6 cut(s) 296, 358, 392, 397, 400, 412
BseYI CCCAGC 1 cut(s) 1007
BsgI GTGCAG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 437, 478, 1207
BshVI ATCGAT 2 cut(s) 930, 1053
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 3 cut(s) 70, 105, 1434
BsiWI CGTACG 1 cut(s) 1095
BslI CCNNNNNNNGG 2 cut(s) 207, 308
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 3 cut(s) 437, 478, 1207
Bsp1286I GDGCHC 3 cut(s) 70, 105, 1434
Bsp143I GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
Bsp19I CCATGG 1 cut(s) 1120
BspACI CCGC 1 cut(s) 1192
BspANI GGCC 3 cut(s) 437, 478, 1207
BspCNI CTCAG 4 cut(s) 208, 374, 1174, 1683
BspDI ATCGAT 2 cut(s) 930, 1053
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 228, 799
BspMAI CTGCAG 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 110
BspTI CTTAAG 3 cut(s) 776, 782, 878
BsrDI GCAATG 2 cut(s) 411, 1077
BsrI ACTGG 4 cut(s) 396, 598, 1485, 1606
BssECI CCNNGG 2 cut(s) 480, 1120
BssMI GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
BssSI CACGAG 1 cut(s) 1275
BssT1I CCWWGG 2 cut(s) 480, 1120
Bst2BI CACGAG 1 cut(s) 1275
Bst2UI CCWGG 3 cut(s) 208, 303, 1629
Bst4CI ACNGT 2 cut(s) 449, 765
Bst6I CTCTTC 2 cut(s) 110, 208
BstAFI CTTAAG 3 cut(s) 776, 782, 878
BstAPI GCANNNNNTGC 4 cut(s) 371, 410, 422, 1040
BstC8I GCNNGC 4 cut(s) 323, 1041, 1734, 1738
BstDEI CTNAG 8 cut(s) 216, 239, 361, 473, 947, 1182, 1493, 1691
BstDSI CCRYGG 1 cut(s) 1120
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 928, 1459
BstKTI GATC 7 cut(s) 234, 566, 930, 934, 1024, 1091, 1318
BstMBI GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 9 cut(s) 371, 377, 380, 401, 410, 422, 434, 749, 1040
BstNI CCWGG 3 cut(s) 208, 303, 1629
BstNSI RCATGY 2 cut(s) 59, 325
BstPAI GACNNNNGTC 1 cut(s) 675
BstSCI CCNGG 3 cut(s) 206, 301, 1627
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 6 cut(s) 296, 358, 392, 397, 400, 412
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 1088
Bsu15I ATCGAT 2 cut(s) 930, 1053
BsuRI GGCC 3 cut(s) 437, 478, 1207
BsuTUI ATCGAT 2 cut(s) 930, 1053
BtgI CCRYGG 1 cut(s) 1120
BtgZI GCGATG 3 cut(s) 124, 767, 1551
BtsCI GGATG 2 cut(s) 928, 1459
BtsI GCAGTG 2 cut(s) 844, 1065
BtsIMutI CAGTG 4 cut(s) 403, 844, 1065, 1392
Cac8I GCNNGC 4 cut(s) 323, 1041, 1734, 1738
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 6 cut(s) 477, 798, 943, 1205, 1240, 1457
ClaI ATCGAT 2 cut(s) 930, 1053
Csp6I GTAC 3 cut(s) 296, 1096, 1135
CviAII CATG 4 cut(s) 38, 56, 322, 1121
CviQI GTAC 3 cut(s) 296, 1096, 1135
DdeI CTNAG 8 cut(s) 216, 239, 361, 473, 947, 1182, 1493, 1691
DpnI GATC 7 cut(s) 233, 565, 929, 933, 1023, 1090, 1317
DpnII GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 110, 208
EarI CTCTTC 2 cut(s) 110, 208
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 480, 1120
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 4 cut(s) 798, 943, 1240, 1457
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 4 cut(s) 396, 711, 879, 894
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 477
EcoRII CCWGG 3 cut(s) 206, 301, 1627
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 480, 1120
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 480, 1120
FaeI CATG 4 cut(s) 41, 59, 325, 1124
FatI CATG 4 cut(s) 37, 55, 321, 1120
FauNDI CATATG 1 cut(s) 345
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 6 cut(s) 285, 372, 381, 411, 414, 426
FokI GGATG 2 cut(s) 935, 1466
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 6 cut(s) 285, 372, 381, 411, 414, 426
FspBI CTAG 5 cut(s) 126, 186, 848, 1209, 1439
GluI GCNGC 6 cut(s) 285, 372, 381, 411, 414, 426
GsaI CCCAGC 1 cut(s) 1011
HaeIII GGCC 3 cut(s) 437, 478, 1207
Hin1II CATG 4 cut(s) 41, 59, 325, 1124
HincII GTYRAC 2 cut(s) 680, 1330
HindII GTYRAC 2 cut(s) 680, 1330
HindIII AAGCTT 2 cut(s) 779, 812
HinfI GANTC 6 cut(s) 359, 488, 844, 985, 1280, 1517
HphI GGTGA 1 cut(s) 1427
Hpy166II GTNNAC 5 cut(s) 358, 680, 801, 1135, 1330
Hpy188I TCNGA 6 cut(s) 217, 691, 721, 769, 990, 1354
Hpy188III TCNNGA 9 cut(s) 38, 126, 455, 494, 517, 593, 1277, 1284, 1319
Hpy8I GTNNAC 5 cut(s) 358, 680, 801, 1135, 1330
HpyAV CCTTC 4 cut(s) 788, 918, 1369, 1626
HpyCH4III ACNGT 2 cut(s) 449, 765
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 9 cut(s) 284, 349, 404, 416, 428, 743, 1034, 1043, 1070
HpyF10VI GCNNNNNNNGC 9 cut(s) 371, 377, 380, 401, 410, 422, 434, 749, 1040
HpyF3I CTNAG 8 cut(s) 216, 239, 361, 473, 947, 1182, 1493, 1691
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 4 cut(s) 41, 59, 325, 1124
Kzo9I GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 6 cut(s) 296, 358, 392, 397, 400, 412
LweI GCATC 3 cut(s) 391, 943, 1609
MaeI CTAG 5 cut(s) 126, 186, 848, 1209, 1439
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 6 cut(s) 8, 529, 757, 1277, 1302, 1557
MalI GATC 7 cut(s) 233, 565, 929, 933, 1023, 1090, 1317
MboI GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
MboII GAAGA 5 cut(s) 97, 195, 680, 974, 1512
MflI RGATCY 1 cut(s) 1088
MhlI GDGCHC 3 cut(s) 70, 105, 1434
MlsI TGGCCA 1 cut(s) 437
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 3 cut(s) 353, 853, 1274
MmeI TCCRAC 1 cut(s) 744
Mox20I TGGCCA 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 1480
MscI TGGCCA 1 cut(s) 437
MseI TTAA 7 cut(s) 191, 777, 783, 879, 1269, 1725, 1744
MslI CAYNNNNRTG 2 cut(s) 1070, 1107
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 287, 1736
MspCI CTTAAG 3 cut(s) 776, 782, 878
MspR9I CCNGG 3 cut(s) 208, 303, 1629
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 3 cut(s) 208, 303, 1629
MwoI GCNNNNNNNGC 9 cut(s) 371, 377, 380, 401, 410, 422, 434, 749, 1040
NcoI CCATGG 1 cut(s) 1120
NdeI CATATG 1 cut(s) 345
NdeII GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
NlaIII CATG 4 cut(s) 41, 59, 325, 1124
NlaIV GGNNCC 2 cut(s) 228, 799
NmuCI GTSAC 3 cut(s) 8, 1277, 1557
NspI RCATGY 2 cut(s) 59, 325
PaeI GCATGC 1 cut(s) 325
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 1282
PctI GAATGC 1 cut(s) 1102
PdmI GAANNNNTTC 1 cut(s) 1480
PfeI GAWTC 3 cut(s) 488, 985, 1517
Pfl23II CGTACG 1 cut(s) 1095
PkrI GCNGC 6 cut(s) 286, 373, 382, 412, 415, 427
Ple19I CGATCG 1 cut(s) 234
PleI GAGTC 3 cut(s) 353, 852, 1274
PpsI GAGTC 3 cut(s) 353, 852, 1274
PscI ACATGT 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 675
PsiI TTATAA 1 cut(s) 1640
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 3 cut(s) 206, 301, 1627
PspFI CCCAGC 1 cut(s) 1007
PspGI CCWGG 3 cut(s) 206, 301, 1627
PspLI CGTACG 1 cut(s) 1095
PspN4I GGNNCC 2 cut(s) 228, 799
PspPI GGNCC 6 cut(s) 477, 798, 943, 1205, 1240, 1457
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 1088
PvuI CGATCG 1 cut(s) 234
PvuII CAGCTG 2 cut(s) 287, 1736
RsaI GTAC 3 cut(s) 297, 1097, 1136
RsaNI GTAC 3 cut(s) 296, 1096, 1135
RseI CAYNNNNRTG 2 cut(s) 1070, 1107
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 7 cut(s) 191, 777, 783, 879, 1269, 1725, 1744
SatI GCNGC 6 cut(s) 285, 372, 381, 411, 414, 426
Sau3AI GATC 7 cut(s) 231, 563, 927, 931, 1021, 1088, 1315
Sau96I GGNCC 6 cut(s) 477, 798, 943, 1205, 1240, 1457
SchI GAGTC 3 cut(s) 353, 853, 1274
ScrFI CCNGG 3 cut(s) 208, 303, 1629
SduI GDGCHC 3 cut(s) 70, 105, 1434
SfaNI GCATC 3 cut(s) 391, 943, 1609
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 4 cut(s) 798, 943, 1240, 1457
SmiMI CAYNNNNRTG 2 cut(s) 1070, 1107
SmlI CTYRAG 7 cut(s) 492, 515, 776, 782, 878, 1319, 1343
SmoI CTYRAG 7 cut(s) 492, 515, 776, 782, 878, 1319, 1343
SphI GCATGC 1 cut(s) 325
SsiI CCGC 1 cut(s) 1192
SspI AATATT 2 cut(s) 247, 617
SspMI CTAG 5 cut(s) 126, 186, 848, 1209, 1439
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 206, 301, 1627
StyI CCWWGG 2 cut(s) 480, 1120
TaaI ACNGT 2 cut(s) 449, 765
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 930, 1053, 1106
TatI WGTACW 1 cut(s) 1134
TfiI GAWTC 3 cut(s) 488, 985, 1517
Tru1I TTAA 7 cut(s) 191, 777, 783, 879, 1269, 1725, 1744
Tru9I TTAA 7 cut(s) 191, 777, 783, 879, 1269, 1725, 1744
TscAI CASTG 4 cut(s) 403, 844, 1072, 1392
TseFI GTSAC 3 cut(s) 8, 1277, 1557
TseI GCWGC 6 cut(s) 284, 371, 380, 410, 413, 425
Tsp45I GTSAC 3 cut(s) 8, 1277, 1557
TspRI CASTG 4 cut(s) 403, 844, 1072, 1392
Vha464I CTTAAG 3 cut(s) 776, 782, 878
VpaK11BI GGWCC 4 cut(s) 798, 943, 1240, 1457
XagI CCTNNNNNAGG 1 cut(s) 205
XapI RAATTY 9 cut(s) 75, 388, 581, 701, 826, 1153, 1424, 1544, 1651
XbaI TCTAGA 1 cut(s) 125
XceI RCATGY 2 cut(s) 59, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 1480
XspI CTAG 5 cut(s) 126, 186, 848, 1209, 1439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.