Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232697.1

Orthogroup ID

OG0003928

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 759

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232697.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 368 bp

gttgaacatgtgattagagaacagaatgttttggctgccaatgagttcattgagctgttctgtgagttaatcgtgtctagacttcaaatcatcgctaagcaaagggagtgcccggctgatctcaaagaagggattgctagcttaatctttgcaacaccaaggtgctctgagattccggaactggtggcactaaggaatatctttgagaagaaatatggaagagatttcgtagctgcagctactgatttgcgacctggatgtggtgtgaatcgcattctcattgacaagctgtctgttagaacccctacgggtgaagtaaagctgaaaatcatgaaggaaatagcgaaggaataccaggttgattggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

122

Amino Acids

13.86

Weight (kDa)

6.78

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35730
fragaria_vesca	FvH4_1g10740 FvH4_5g10670
malus_domestica	MD02G1121300.v1.1 MD04G1038700.v1.1 MD14G1122700.v1.1 MD15G1235100.v1.1 MD15G1309100.v1.1
prunus_persica	Prupe.7G178000_v2.0.a1
pyrus_communis	pycom02g09440 pycom03g12370 pycom03g12380 pycom04g03150 pycom06g01650 pycom08g13410 pycom08g13420 pycom10g11000 pycom15g20930
rosa_chinensis	RchiOBHm_Chr2g0097911
rosa_laevigata	RLG00000016744
rosa_multiflora	Rmu_co8027370.1_g000001 Rmu_co8137744.1_g000001 Rmu_co8232697.1_g000001 Rmu_sc0009572.1_g000007 Rmu_sc0018984.1_g000001 Rmu_sc0034225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144460
rosa_rugosa	Rorug02G0069100
rosa_samantha	Rh2AG116000 Rh2BG118800 Rh2CG120200 Rh2CG120400 Rh2DG120100
rosa_wichuraiana	Rw2G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	5, 86
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	253, 354
AleI	CACNNNNGTG	1 cut(s)	160
AluBI	AGCT	6 cut(s)	55, 141, 233, 239, 289, 322
AluI	AGCT	6 cut(s)	55, 141, 233, 239, 289, 322
Alw21I	GWGCWC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	35, 233, 236
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	323
AsuNHI	GCTAGC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	22, 220, 248
BciT130I	CCWGG	2 cut(s)	255, 356
BcnI	CCSGG	1 cut(s)	113
BfaI	CTAG	2 cut(s)	78, 138
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	3 cut(s)	36, 234, 237
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	3 cut(s)	37, 235, 238
Bme1390I	CCNGG	3 cut(s)	113, 255, 356
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmrFI	CCNGG	3 cut(s)	113, 255, 356
BmtI	GCTAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	255, 356
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	22, 220, 248
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	113, 176
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	113, 167
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	238
BspOI	GCTAGC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	255, 356
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	96, 168, 191
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	255, 356
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	111, 253, 354
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	22, 220, 248
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	330
CsiI	ACCWGGT	1 cut(s)	354
CviAII	CATG	2 cut(s)	8, 331
CviJI	RGCY	8 cut(s)	35, 55, 116, 141, 233, 239, 289, 322
CviKI_1	RGCY	8 cut(s)	35, 55, 116, 141, 233, 239, 289, 322
DdeI	CTNAG	3 cut(s)	96, 168, 191
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	214
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	253, 354
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	11, 334
FaiI	YATR	3 cut(s)	9, 216, 332
FatI	CATG	2 cut(s)	7, 330
Fnu4HI	GCNGC	3 cut(s)	36, 234, 237
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	36, 234, 237
FspBI	CTAG	2 cut(s)	78, 138
GluI	GCNGC	3 cut(s)	36, 234, 237
HapII	CCGG	2 cut(s)	113, 176
Hin1II	CATG	2 cut(s)	11, 334
HinfI	GANTC	2 cut(s)	172, 268
HpaII	CCGG	2 cut(s)	113, 176
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	78, 176, 331
HpyAV	CCTTC	3 cut(s)	122, 328, 340
HpyCH4V	TGCA	2 cut(s)	152, 236
HpyF3I	CTNAG	3 cut(s)	96, 168, 191
Hsp92II	CATG	2 cut(s)	11, 334
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	126, 167, 189, 240, 267, 341
Lsp1109I	GCAGC	3 cut(s)	22, 220, 248
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	2 cut(s)	78, 138
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	220, 231
MhlI	GDGCHC	2 cut(s)	113, 167
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	2 cut(s)	68, 143
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	2 cut(s)	113, 176
MspR9I	CCNGG	3 cut(s)	113, 255, 356
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	255, 356
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	118
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	11, 334
NspI	RCATGY	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	160
PagI	TCATGA	1 cut(s)	330
PciI	ACATGT	1 cut(s)	7
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	172, 268
PkrI	GCNGC	3 cut(s)	37, 235, 238
PscI	ACATGT	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	253, 354
PspGI	CCWGG	2 cut(s)	253, 354
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	68, 143
SatI	GCNGC	3 cut(s)	36, 234, 237
Sau3AI	GATC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	113, 255, 356
SduI	GDGCHC	2 cut(s)	113, 167
SetI	ASST	9 cut(s)	57, 143, 164, 235, 241, 256, 291, 324, 360
SexAI	ACCWGGT	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	160
SspMI	CTAG	2 cut(s)	78, 138
StyD4I	CCNGG	3 cut(s)	111, 253, 354
StyI	CCWWGG	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	172, 268
Tru1I	TTAA	2 cut(s)	68, 143
Tru9I	TTAA	2 cut(s)	68, 143
TseI	GCWGC	3 cut(s)	35, 233, 236
TspDTI	ATGAA	2 cut(s)	37, 347
XbaI	TCTAGA	1 cut(s)	77
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	2 cut(s)	78, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.