Rh2BG118800

IST1 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
10092505 .. 10095983
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG118800.1

Sequence Viewer

Length: 1467 bp
ATGACCGTCGCCACCGCGGCCTCAACCCAAACCAAAAAGCTCATGAAGCTCGGCCTCTCTCTTTTCCGATGGGGCTTCAACTCCTCCAAATGCAAAACAGCGGCGAAGATGGCTGTGGCGAGAATAAAGCTGCTGAGGAACAAGAGGCAGGTGGTGGTGAAGCAGATGAGGCGTGACATTGCTTCTCTGCTTCAGAAAGGTGAAGACGCCACTGCTCGTATCCGGGTTGAACATGTGATTAGAGAACAGAATGTTTTGGCTGCCAATGAGTTCATTGAGCTGTTCTGTGAGTTAATCGTGTCTAGACTTCAAATCATCGCTAAGCAAAGGGAGTGCCCGGCTGATCTCAAAGAAGGGATTGCTAGCTTAATCTTTGCAACACCAAGGTGCTCTGAGATTCCGGAACTGGTGGCACTAAGGAATATCTTTGAGAAGAAATATGGAAGAGATTTCGTAGCTGCAGCTACTGATTTGCGACCTGGATGTGGTGTGAATCGCATTCTCATTGACAAGCTGTCTGTTAGAACCCCTACGGGTGAAGTAAAGCTGAAAATCATGAAGGAAATAGCGAAGGAATACCAGGTTGATTGGGATACAACAGAATCTGAACAAGAACTTCTCAAACCTCCAGAAGAGACTCTAGATGGACCGCGTACTTTTGTTAGTGCTACCAGCTTGCCTGTGACAACCCAATCTTTTGAGTCTAACAAGTCAGAAACCAGGCTTTCTTCCAGTTCGTTGTGCAGAACAAGTGGTGGTGGACAGAGGGAAACCAGTTCTACCGGCAGAATGAGTGATGGTGGAGAAAGGGAAACTAGTTCCTTTCGCAGAACAAGCGGTGGTGGAGTAAGAGAAACCAGTGTTTCTTCTGGCTCTTTTCACAGAATAAGTGGTGGTGGAGAAAGGGGACATTTGCAATTTGCAGACTCGGCATCAGCTGCCGCAGCAGCTGCAAAATCTGCCAGTGATGCAATGGCGGCTGCACAAGTGGCTGCATTTCTGGCCAACAAAGACTCCAATCGGGCATCTGCTAATGAATTTAAAACCCTTTCGAGCAATTCCACCGGCCAACAAGGACCAGATAGTCCATCTCTTGACTCTTATGACATGGATCATCAATATGAAGCTGAGGGAAAAACACACTGGGCGGAGAGTTTGGACAGGTCATATTCTTCAAACAATGACGTTAACCATGGAGGAGAGGGGAAGAATTTTGTCTATAGAAGATACAGCTACAATGCTGCACCATCAGAAAATTCAGGTATCAAGTTTGATGAATCAGACACCGATGAAGAGATTGAAATGGAAGCACCTCCTAGTGGGAATTATCAAGGGCCCGAGCGTCCTCCACCACCAGTACCTTCGGCAACTGTTAGGCAGGACTCACTTCATCGCGTTCATCCCAAATTGCCTGATTACGATACACTTGCTGCTCGCTTTGATGCCCTTAAGCATCATCACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

53.51

Weight (kDa)

8.1

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ist1 PF03398 32 - 196 2.2e-61 Regulator of Vps4 activity in the MVB pathway
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
AasI GACNNNNNNGTC 1 cut(s) 1083
Acc36I ACCTGC 1 cut(s) 139
AccII CGCG 3 cut(s) 17, 652, 1395
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 8 cut(s) 15, 17, 101, 650, 837, 942, 977, 1148
AclWI GGATC 1 cut(s) 1119
AcoI YGGCCR 2 cut(s) 1002, 1066
AcsI RAATTY 3 cut(s) 1037, 1210, 1255
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 655, 1359
AfiI CCNNNNNNNGG 2 cut(s) 485, 1319
AflII CTTAAG 1 cut(s) 1448
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 5 cut(s) 79, 230, 311, 1176, 1301
AhdI GACNNNNNGTC 1 cut(s) 514
AhlI ACTAGT 1 cut(s) 815
AjnI CCWGG 3 cut(s) 478, 579, 719
AleI CACNNNNGTG 1 cut(s) 385
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 1 cut(s) 1119
AlwNI CAGNNNCTG 3 cut(s) 467, 605, 950
Ama87I CYCGRG 1 cut(s) 1337
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 5 cut(s) 18, 52, 1002, 1066, 1334
ApaI GGGCCC 1 cut(s) 1338
ApoI RAATTY 3 cut(s) 1037, 1210, 1255
AspS9I GGNCC 4 cut(s) 647, 1076, 1334, 1335
AsuC2I CCSGG 2 cut(s) 224, 338
AsuHPI GGTGA 3 cut(s) 169, 212, 548
AsuNHI GCTAGC 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 1337
AvaII GGWCC 2 cut(s) 647, 1076
BaeGI GKGCMC 2 cut(s) 338, 1338
BalI TGGCCA 1 cut(s) 1004
BanII GRGCYC 1 cut(s) 1338
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 392
BbvCI CCTCAGC 2 cut(s) 134, 1128
BccI CCATC 6 cut(s) 63, 103, 638, 791, 1096, 1255
BcgI CGANNNNNNTGC 2 cut(s) 1409, 1443
BciT130I CCWGG 3 cut(s) 480, 581, 721
BciVI GTATCC 2 cut(s) 230, 586
BcnI CCSGG 2 cut(s) 224, 338
BcoDI GTCTC 1 cut(s) 629
BcuI ACTAGT 1 cut(s) 815
BfaI CTAG 5 cut(s) 303, 363, 641, 816, 1317
BfmI CTRYAG 2 cut(s) 459, 1219
BfrI CTTAAG 1 cut(s) 1448
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 2 cut(s) 230, 586
BglI GCCNNNNNGGC 1 cut(s) 17
BlpI GCTNAGC 1 cut(s) 321
Bme1390I CCNGG 5 cut(s) 224, 338, 480, 581, 721
Bme18I GGWCC 2 cut(s) 647, 1076
BmeRI GACNNNNNGTC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 4 cut(s) 647, 1076, 1334, 1335
BmiI GGNNCC 1 cut(s) 1336
BmrFI CCNGG 5 cut(s) 224, 338, 480, 581, 721
BmrI ACTGGG 1 cut(s) 1153
BmsI GCATC 5 cut(s) 941, 958, 1034, 1432, 1462
BmtI GCTAGC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 1153
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 612
Bpu10I CCTNAGC 2 cut(s) 134, 1128
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 224, 338
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 15, 383, 1192
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 998, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 1319
Bse118I RCCGGY 2 cut(s) 782, 1064
Bse1I ACTGG 7 cut(s) 411, 732, 774, 858, 963, 1148, 1355
Bse3DI GCAATG 2 cut(s) 177, 978
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 3 cut(s) 480, 581, 721
BseDI CCNNGG 3 cut(s) 15, 383, 1192
BseGI GGATG 2 cut(s) 488, 1399
BseLI CCNNNNNNNGG 2 cut(s) 485, 1319
BseMI GCAATG 2 cut(s) 177, 978
BseMII CTCAG 3 cut(s) 125, 384, 1119
BseNI ACTGG 7 cut(s) 411, 732, 774, 858, 963, 1148, 1355
BseRI GAGGAG 2 cut(s) 73, 1212
BseSI GKGCMC 2 cut(s) 338, 1338
BsgI GTGCAG 3 cut(s) 763, 966, 1227
Bsh1236I CGCG 3 cut(s) 17, 652, 1395
BshFI GGCC 5 cut(s) 20, 54, 1004, 1068, 1336
BsiHKAI GWGCWC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 1337
BsiSI CCGG 5 cut(s) 223, 338, 401, 783, 1065
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 2 cut(s) 485, 1319
BsmAI GTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 5 cut(s) 20, 54, 1004, 1068, 1336
BsoBI CYCGRG 1 cut(s) 1337
Bsp120I GGGCCC 1 cut(s) 1334
Bsp1286I GDGCHC 3 cut(s) 338, 392, 1338
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 2 cut(s) 343, 1111
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 1192
BspACI CCGC 8 cut(s) 15, 17, 101, 650, 837, 942, 977, 1148
BspANI GGCC 5 cut(s) 20, 54, 1004, 1068, 1336
BspCNI CTCAG 3 cut(s) 126, 385, 1120
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 3 cut(s) 17, 652, 1395
BspHI TCATGA 2 cut(s) 42, 555
BspLI GGNNCC 1 cut(s) 1336
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 366
BspPI GGATC 1 cut(s) 1119
BspTI CTTAAG 1 cut(s) 1448
BsrDI GCAATG 2 cut(s) 177, 978
BsrFI RCCGGY 2 cut(s) 782, 1064
BsrI ACTGG 7 cut(s) 411, 732, 774, 858, 963, 1148, 1355
BssAI RCCGGY 2 cut(s) 782, 1064
BssECI CCNNGG 3 cut(s) 15, 383, 1192
BssMI GATC 2 cut(s) 343, 1111
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 383, 1192
Bst2UI CCWGG 3 cut(s) 480, 581, 721
Bst4CI ACNGT 2 cut(s) 7, 1372
Bst6I CTCTTC 3 cut(s) 439, 627, 1287
BstACI GRCGYC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 1448
BstAPI GCANNNNNTGC 3 cut(s) 938, 950, 959
BstC8I GCNNGC 3 cut(s) 364, 677, 1435
BstDEI CTNAG 5 cut(s) 134, 321, 393, 416, 1128
BstDSI CCRYGG 2 cut(s) 15, 1192
BstF5I GGATG 2 cut(s) 488, 1399
BstFNI CGCG 3 cut(s) 17, 652, 1395
BstKTI GATC 2 cut(s) 346, 1114
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 2 cut(s) 343, 1111
BstNI CCWGG 3 cut(s) 480, 581, 721
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 5 cut(s) 222, 336, 478, 579, 719
BstSFI CTRYAG 2 cut(s) 459, 1219
BstSLI GKGCMC 2 cut(s) 338, 1338
BstUI CGCG 3 cut(s) 17, 652, 1395
BstV2I GAAGAC 1 cut(s) 210
BsuI GTATCC 2 cut(s) 230, 586
BsuRI GGCC 5 cut(s) 20, 54, 1004, 1068, 1336
BtgI CCRYGG 2 cut(s) 15, 1192
BtgZI GCGATG 2 cut(s) 301, 1376
BtsCI GGATG 2 cut(s) 488, 1399
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 4 cut(s) 210, 865, 970, 1141
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 364, 677, 1435
CaiI CAGNNNCTG 3 cut(s) 467, 605, 950
CciI TCATGA 2 cut(s) 42, 555
Cfr10I RCCGGY 2 cut(s) 782, 1064
Cfr13I GGNCC 4 cut(s) 647, 1076, 1334, 1335
Cfr42I CCGCGG 1 cut(s) 18
CseI GACGC 2 cut(s) 215, 1331
CsiI ACCWGGT 1 cut(s) 579
Csp6I GTAC 2 cut(s) 654, 1358
CviAII CATG 5 cut(s) 43, 233, 556, 1108, 1193
CviQI GTAC 2 cut(s) 654, 1358
DdeI CTNAG 5 cut(s) 134, 321, 393, 416, 1128
DpnI GATC 2 cut(s) 345, 1113
DpnII GATC 2 cut(s) 343, 1111
DraI TTTAAA 1 cut(s) 1042
DrdI GACNNNNNNGTC 1 cut(s) 1083
DriI GACNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 1083
EaeI YGGCCR 2 cut(s) 1002, 1066
Eam1104I CTCTTC 3 cut(s) 439, 627, 1287
Eam1105I GACNNNNNGTC 1 cut(s) 514
EarI CTCTTC 3 cut(s) 439, 627, 1287
EciI GGCGGA 1 cut(s) 1163
Eco130I CCWWGG 2 cut(s) 383, 1192
Eco24I GRGCYC 1 cut(s) 1338
Eco47I GGWCC 2 cut(s) 647, 1076
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 1337
EcoO109I RGGNCCY 1 cut(s) 1334
EcoRII CCWGG 3 cut(s) 478, 579, 719
EcoT14I CCWWGG 2 cut(s) 383, 1192
EcoT38I GRGCYC 1 cut(s) 1338
ErhI CCWWGG 2 cut(s) 383, 1192
FaeI CATG 5 cut(s) 46, 236, 559, 1111, 1196
FaqI GGGAC 1 cut(s) 921
FatI CATG 5 cut(s) 42, 232, 555, 1107, 1192
FokI GGATG 2 cut(s) 495, 1386
FriOI GRGCYC 1 cut(s) 1338
FspBI CTAG 5 cut(s) 303, 363, 641, 816, 1317
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 5 cut(s) 20, 54, 1004, 1068, 1336
HapII CCGG 5 cut(s) 223, 338, 401, 783, 1065
HgaI GACGC 2 cut(s) 215, 1331
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 5 cut(s) 46, 236, 559, 1111, 1196
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HpaI GTTAAC 1 cut(s) 1189
HpaII CCGG 5 cut(s) 223, 338, 401, 783, 1065
HphI GGTGA 3 cut(s) 169, 212, 548
Hpy166II GTNNAC 2 cut(s) 761, 1189
Hpy188I TCNGA 7 cut(s) 68, 195, 394, 607, 715, 1252, 1282
Hpy188III TCNNGA 7 cut(s) 43, 303, 401, 556, 629, 641, 1094
Hpy8I GTNNAC 2 cut(s) 761, 1189
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 347, 553, 565, 1371
HpyCH4III ACNGT 2 cut(s) 7, 1372
HpyCH4IV ACGT 1 cut(s) 1185
HpyF3I CTNAG 5 cut(s) 134, 321, 393, 416, 1128
HpySE526I ACGT 1 cut(s) 1185
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 5 cut(s) 46, 236, 559, 1111, 1196
Kpn2I TCCGGA 1 cut(s) 400
KspAI GTTAAC 1 cut(s) 1189
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 2 cut(s) 343, 1111
LweI GCATC 5 cut(s) 941, 958, 1034, 1432, 1462
MabI ACCWGGT 1 cut(s) 579
MaeI CTAG 5 cut(s) 303, 363, 641, 816, 1317
MaeII ACGT 1 cut(s) 1185
MaeIII GTNAC 2 cut(s) 173, 682
MalI GATC 2 cut(s) 345, 1113
MboI GATC 2 cut(s) 343, 1111
MhlI GDGCHC 3 cut(s) 338, 392, 1338
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 7 cut(s) 917, 1037, 1057, 1210, 1255, 1324, 1406
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 6 cut(s) 631, 710, 920, 1007, 1091, 1376
Mox20I TGGCCA 1 cut(s) 1004
MroI TCCGGA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 5 cut(s) 293, 368, 1041, 1188, 1449
MslI CAYNNNNRTG 2 cut(s) 385, 1119
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 4 cut(s) 17, 101, 938, 950
MspCI CTTAAG 1 cut(s) 1448
MspI CCGG 5 cut(s) 223, 338, 401, 783, 1065
MspR9I CCNGG 5 cut(s) 224, 338, 480, 581, 721
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 3 cut(s) 480, 581, 721
MvnI CGCG 3 cut(s) 17, 652, 1395
NciI CCSGG 2 cut(s) 224, 338
NcoI CCATGG 1 cut(s) 1192
NdeII GATC 2 cut(s) 343, 1111
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 5 cut(s) 46, 236, 559, 1111, 1196
NlaIV GGNNCC 1 cut(s) 1336
NmeAIII GCCGAG 2 cut(s) 30, 908
NmuCI GTSAC 2 cut(s) 173, 682
NspI RCATGY 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 385
PagI TCATGA 2 cut(s) 42, 555
PaqCI CACCTGC 1 cut(s) 139
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 397, 493, 602, 1277
PleI GAGTC 6 cut(s) 631, 709, 920, 1007, 1091, 1376
PpsI GAGTC 6 cut(s) 631, 709, 920, 1007, 1091, 1376
PscI ACATGT 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 478, 579, 719
PspGI CCWGG 3 cut(s) 478, 579, 719
PspN4I GGNNCC 1 cut(s) 1336
PspOMI GGGCCC 1 cut(s) 1334
PspPI GGNCC 4 cut(s) 647, 1076, 1334, 1335
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 3 cut(s) 467, 605, 950
PvuII CAGCTG 2 cut(s) 938, 950
RsaI GTAC 2 cut(s) 655, 1359
RsaNI GTAC 2 cut(s) 654, 1358
RseI CAYNNNNRTG 2 cut(s) 385, 1119
SacII CCGCGG 1 cut(s) 18
SaqAI TTAA 5 cut(s) 293, 368, 1041, 1188, 1449
Sau3AI GATC 2 cut(s) 343, 1111
Sau96I GGNCC 4 cut(s) 647, 1076, 1334, 1335
SchI GAGTC 6 cut(s) 631, 710, 920, 1007, 1091, 1376
ScrFI CCNGG 5 cut(s) 224, 338, 480, 581, 721
SduI GDGCHC 3 cut(s) 338, 392, 1338
SexAI ACCWGGT 1 cut(s) 579
SfaNI GCATC 5 cut(s) 941, 958, 1034, 1432, 1462
SfcI CTRYAG 2 cut(s) 459, 1219
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
SinI GGWCC 2 cut(s) 647, 1076
SmiMI CAYNNNNRTG 2 cut(s) 385, 1119
SmlI CTYRAG 1 cut(s) 1448
SmoI CTYRAG 1 cut(s) 1448
SpeI ACTAGT 1 cut(s) 815
Sse9I AATT 7 cut(s) 917, 1037, 1057, 1210, 1255, 1324, 1406
SsiI CCGC 8 cut(s) 15, 17, 101, 650, 837, 942, 977, 1148
SspMI CTAG 5 cut(s) 303, 363, 641, 816, 1317
StyD4I CCNGG 5 cut(s) 222, 336, 478, 579, 719
StyI CCWWGG 2 cut(s) 383, 1192
TaaI ACNGT 2 cut(s) 7, 1372
TaiI ACGT 1 cut(s) 1188
TaqI TCGA 1 cut(s) 1052
TasI AATT 7 cut(s) 917, 1037, 1057, 1210, 1255, 1324, 1406
TauI GCSGC 4 cut(s) 20, 104, 944, 980
TfiI GAWTC 4 cut(s) 397, 493, 602, 1277
Tru1I TTAA 5 cut(s) 293, 368, 1041, 1188, 1449
Tru9I TTAA 5 cut(s) 293, 368, 1041, 1188, 1449
TscAI CASTG 4 cut(s) 217, 865, 970, 1148
TseFI GTSAC 2 cut(s) 173, 682
Tsp45I GTSAC 2 cut(s) 173, 682
TspDTI ATGAA 9 cut(s) 59, 262, 572, 1050, 1137, 1290, 1305, 1379, 1388
TspRI CASTG 4 cut(s) 217, 865, 970, 1148
Vha464I CTTAAG 1 cut(s) 1448
VpaK11BI GGWCC 2 cut(s) 647, 1076
XapI RAATTY 3 cut(s) 1037, 1210, 1255
XbaI TCTAGA 2 cut(s) 302, 640
XceI RCATGY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XspI CTAG 5 cut(s) 303, 363, 641, 816, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.