Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

17370631 .. 17375677

Gene Structure 5047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25890.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGAAACCATACTTCCACTCCTCCCTCCTCCGCCGCCTCTCCCTCCTAAACCCCAACAAGCCCCTCTCCTCCCAACCAAACCCACTTCCTCCAACCCAAACCCAACTCCTCACCTCTCTCCTCTCCCACAAATCCGACCCCAGTTCCGCTCTACACCTCTTCAAAACCAACCCATCCTCTCTTCACTCCCTCCACACCGTCGCCGTCATGCTCCACATCTTAATGCCCTTCCCGGAGACTCATGCCCGCGCCAAAACCTTGCTTTACTCTTACGTTTCCGGCGGCTCCGGCCCTGCTCCGGCGCTGCTCGTCGACTCTCTGCTCGACTGCGCAAAGAGGTTTGAGTTTGATTCAGTTTCTTCGCCGGTTTTTAGTTACTTGTTGAATAGCTATGTTAGAGCCGATCGAATAAGGGATGCTGTTAACTGCTTGGAACGAATGGTGGAGATTGGGGTGTGTGGCAGTGTTGAATGTATGAACATTGTGTTGAAGGCGTTGTTTCGGAGGAATATGTTTAAGGAAGCAAAGGAGTTGTATGGTGGGATGGTTGGGAGGGGAGTTGGTGGTGATTGTGCTACATTGCATGTGATGATGCGTGTTTGTTTCAAGGAGGGGAAGCCAGGTGAGGCCGAGGAGTATTTTCGGAATGCCAGGGGGAGAGGGATTGCTGCGGATGGGGAGTTGTATGATGTGGCGATCGGGGCTGCTTGTATGAGTGGTGATTTGTGTTTGGGGTTGGTGTTGTTGGATGAGATGAGGGAGATGGGGTTGGTTCCGTCTGGGCGGAGTTATACCGGTGTGATTGGGGCTTGTGTGAAGAAGGGGGATATGATGGAGGCGTTGAGGCGCAAGGATGAGATGGTGAGGTGTGGGGTGTCGATTGATTTGGTTGGTGCTACGAGCTTGATGGAGGGGTATTGTGCGCAAGGGAAGTTGGATGCTGCTTTGGATTTGTTTAAGATGATTAAGGAGGACGGGCTTGTTCCTAACAGAAGAACGTATGCAACTGTGATAGGAGGGTGCTGTAAGAACGGGAACATGGACAAGGCATATGAGCTTTACACCCAAATGACACAGATGGGTGTTTTGCCTGATGTTTTCATTGCAAATCATTTGGTACGTGGTTTTTTGAAATGTCGGTCACCTGAACACGCTTCTAAGTTGCTTGACGAGGCAGTTGACTACGGTATTGTGGATGTCTTCCTGTATAATAATTTCTTAGCATGGCTTTGTAGGGAGGGTAAAGTAAGCGAAGCTCGTAGTTTATGGGATAAGATGATGCGTAATGGTGTGGCACCTAATGCTGTTTCCTACAACAACATCATACATGGCTATTGCAGAATAGGGGATATGGATCGTGCAAATAGTGAATTTTTGGAGATGACAAAAAGGGGTTTGGAACCTACTGTTTTTACCTACTCGATATTGATGAATGGGTATTTCAGGAAAGGTGATACCGAACGTGCCTTTAATGTCTTTGATGATATGGTGGATGCAAAGAAAATCCCCACAGCCTACACAATTAACATTATCATTGATGGCCTGTGCAAAGTTGGCCAGACATCTATGGCAATTGATCTTTTGCAGAAATTTATTGAGAAGGGTTTTATTCCTGGATGTATGACGTATAATAGTATTATACATGGGTTTACCAAGGAGGGTGTCATGGATTCTGCACTGACTGTTTATAGAGAAATGTGTGAAGCTGGAGTCACTCCAACTGTTGTCACTTACACCAGCCTCATTAACGGGCTATGCAAAAGCAATAAAATAGATCTTGCTTTTGAAATGTGGGATGAGATGAAAAGTAAGGGCTTGAAATTGGATGTTGCTGCATACTCTGCTCTGATAGATGGGTTTTGCAAAAGGCAAGACATGAAAAGTGCCCGCCAACTTTTCTCCGAACTTCTGGAAGCTGGTTTATCTCCAAATACAGCTGTTTATACCACCATGATTAGTGGCTTCCGGGATGTAAATAACATGGAAGAAGCTCTTCGATTACGTGAGAAAATGATAAATGAAGGCATTCCATGTGATGTGAAAACATACACTGCATTAATCGATGGACTGCTAAGAAAGGGTGATGTAAAATTTGCATCAGATCTTTTCTCAGAGATGATTTCGAAGGGAATTATACCTGATATCAACATATATACAGTTTTAATAAATGGCCTTTGTAACAGAAGGCAATTGGAGAAGGCACGTAAAAACTTGGAATCCATGAATAGAAAGGGAATGACTGCTAGTTCTCATATTTATACTGCTTTGATTGTTGGGCACTTTAAGGAGGGGAAGTTGCAAAAGTCATTTAAGTTGCATGATGAGATGCTTGACAAAGGCCTTGTACCTGATGACATTACTTGTGATATTCTTATAAATGGAAAGTTCAAAGGCATAAATGTTCTTCCGAGGACTTCATGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

809

Amino Acids

89.65

Weight (kDa)

8.14

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	284 - 343	5.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	295 - 343	2.7e-12	PPR repeat family
PPR_1	PF12854	325 - 358	1.4e-10	PPR repeat
PPR_2	PF13041	333 - 367	8.8e-09	PPR repeat family
PPR	PF01535	333 - 362	6.3e-07	PPR repeat
PPR_2	PF13041	399 - 439	2.6e-11	PPR repeat family
PPR_long	PF17177	416 - 533	5.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	422 - 479	3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	429 - 454	9.1e-08	PPR repeat
PPR_2	PF13041	433 - 481	2.3e-17	PPR repeat family
PPR_3	PF13812	460 - 513	7.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	464 - 497	5.9e-11	PPR repeat
PPR	PF01535	471 - 498	4.3e-06	PPR repeat
PPR_2	PF13041	475 - 517	1.4e-11	PPR repeat family
TPR_24	PF23276	518 - 635	1.1e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	527 - 583	2.4e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	534 - 617	5.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	534 - 566	2.2e-06	PPR repeat
PPR_2	PF13041	541 - 587	2.3e-16	PPR repeat family
PPR	PF01535	542 - 571	7.1e-06	PPR repeat
PPR_long	PF17177	551 - 695	1.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	570 - 602	1.3e-13	PPR repeat
PPR_2	PF13041	573 - 622	8.8e-19	PPR repeat family
PPR	PF01535	576 - 606	1.6e-09	PPR repeat
PPR_3	PF13812	598 - 653	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	604 - 635	6.9e-07	PPR repeat
PPR_2	PF13041	609 - 655	8e-12	PPR repeat family
PPR_2	PF13041	643 - 691	1.1e-12	PPR repeat family
PPR_3	PF13812	667 - 724	6.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	675 - 706	8.4e-06	PPR repeat
PPR_2	PF13041	682 - 727	1.7e-12	PPR repeat family
PPR	PF01535	682 - 711	9.4e-07	PPR repeat
PPR_2	PF13041	713 - 750	3.9e-06	PPR repeat family
PPR_2	PF13041	750 - 794	1.3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2375
Acc16I	TGCGCA	2 cut(s)	331, 924
AccB1I	GGYRCC	1 cut(s)	1294
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	249
AciI	CCGC	8 cut(s)	31, 34, 147, 247, 282, 671, 784, 1888
AclWI	GGATC	1 cut(s)	1362
AcoI	YGGCCR	1 cut(s)	1555
AcsI	RAATTY	3 cut(s)	1370, 1589, 2090
AfaI	GTAC	2 cut(s)	1119, 2346
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgeI	ACCGGT	1 cut(s)	794
AgsI	TTSAA	9 cut(s)	163, 385, 470, 490, 607, 1132, 1787, 1819, 2389
AjnI	CCWGG	3 cut(s)	619, 650, 1612
AluBI	AGCT	8 cut(s)	390, 903, 1057, 1256, 1706, 1916, 1937, 1991
AluI	AGCT	8 cut(s)	390, 903, 1057, 1256, 1706, 1916, 1937, 1991
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	1362
AoxI	GGCC	6 cut(s)	289, 627, 1540, 1555, 2170, 2338
ApeKI	GCWGC	5 cut(s)	304, 668, 704, 941, 1832
ApoI	RAATTY	3 cut(s)	1370, 1589, 2090
AseI	ATTAAT	1 cut(s)	2057
AsiGI	ACCGGT	1 cut(s)	794
Asp700I	GAANNNNTTC	2 cut(s)	1992, 2025
AspLEI	GCGC	5 cut(s)	251, 304, 332, 849, 925
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	2 cut(s)	233, 1967
AsuHPI	GGTGA	8 cut(s)	103, 578, 635, 731, 874, 1134, 1463, 2093
AsuII	TTCGAA	1 cut(s)	2123
BaeGI	GKGCMC	2 cut(s)	1888, 2280
BalI	TGGCCA	1 cut(s)	1557
BanI	GGYRCC	1 cut(s)	1294
BbsI	GAAGAC	1 cut(s)	1192
BbvI	GCAGC	5 cut(s)	291, 655, 691, 928, 1819
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	3 cut(s)	621, 652, 1614
BcnI	CCSGG	2 cut(s)	233, 1967
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	2 cut(s)	2244, 2425
BfoI	RGCGCY	1 cut(s)	305
BglII	AGATCT	2 cut(s)	1774, 2101
BisI	GCNGC	7 cut(s)	34, 283, 305, 669, 705, 942, 1833
BlsI	GCNGC	7 cut(s)	35, 284, 306, 670, 706, 943, 1834
Bme1390I	CCNGG	5 cut(s)	233, 621, 652, 1614, 1967
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	4 cut(s)	286, 774, 1296, 1401
BmrFI	CCNGG	5 cut(s)	233, 621, 652, 1614, 1967
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	7 cut(s)	406, 582, 928, 1269, 1483, 2105, 2316
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	1192
BpmI	CTGGAG	1 cut(s)	1728
Bpu14I	TTCGAA	1 cut(s)	2123
BpuMI	CCSGG	2 cut(s)	233, 1967
Bsa29I	ATCGAT	1 cut(s)	2061
BsaAI	YACGTR	3 cut(s)	1121, 2003, 2204
BsaBI	GATNNNNATC	1 cut(s)	1353
BsaJI	CCNNGG	4 cut(s)	630, 651, 1653, 2408
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 752, 782, 2279, 2309
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	2 cut(s)	364, 794
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	2 cut(s)	578, 1101
Bse8I	GATNNNNATC	1 cut(s)	1353
BseBI	CCWGG	3 cut(s)	621, 652, 1614
BseCI	ATCGAT	1 cut(s)	2061
BseDI	CCNNGG	4 cut(s)	630, 651, 1653, 2408
BseJI	GATNNNNATC	1 cut(s)	1353
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	2 cut(s)	578, 1101
BseMII	CTCAG	1 cut(s)	2124
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	6 cut(s)	10, 17, 58, 98, 110, 647
BseSI	GKGCMC	2 cut(s)	1888, 2280
BseXI	GCAGC	5 cut(s)	291, 655, 691, 928, 1819
BsgI	GTGCAG	1 cut(s)	1659
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	2 cut(s)	406, 699
BshFI	GGCC	6 cut(s)	291, 629, 1542, 1557, 2172, 2340
BshNI	GGYRCC	1 cut(s)	1294
BshTI	ACCGGT	1 cut(s)	794
BshVI	ATCGAT	1 cut(s)	2061
BsiEI	CGRYCG	2 cut(s)	406, 699
BsiSI	CCGG	7 cut(s)	233, 279, 288, 299, 365, 795, 1966
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	652, 2025
BsnI	GGCC	6 cut(s)	291, 629, 1542, 1557, 2172, 2340
Bsp119I	TTCGAA	1 cut(s)	2123
Bsp1286I	GDGCHC	2 cut(s)	1888, 2280
Bsp143I	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
BspACI	CCGC	8 cut(s)	31, 34, 147, 247, 282, 671, 784, 1888
BspANI	GGCC	6 cut(s)	291, 629, 1542, 1557, 2172, 2340
BspCNI	CTCAG	1 cut(s)	2123
BspDI	ATCGAT	1 cut(s)	2061
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	286, 774, 1296, 1401
BspPI	GGATC	1 cut(s)	1362
BspQI	GCTCTTC	1 cut(s)	1998
BspT104I	TTCGAA	1 cut(s)	2123
BspT107I	GGYRCC	1 cut(s)	1294
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	578, 1101
BsrFI	RCCGGY	2 cut(s)	364, 794
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	2 cut(s)	364, 794
BssECI	CCNNGG	4 cut(s)	630, 651, 1653, 2408
BssMI	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
BssT1I	CCWWGG	1 cut(s)	1653
Bst2UI	CCWGG	3 cut(s)	621, 652, 1614
Bst4CI	ACNGT	7 cut(s)	199, 1009, 1187, 1408, 1684, 1723, 2158
Bst6I	CTCTTC	3 cut(s)	164, 186, 1998
BstAPI	GCANNNNNTGC	2 cut(s)	1301, 1841
BstBAI	YACGTR	3 cut(s)	1121, 2003, 2204
BstBI	TTCGAA	1 cut(s)	2123
BstC8I	GCNNGC	2 cut(s)	247, 1888
BstDEI	CTNAG	4 cut(s)	1158, 1219, 2072, 2110
BstEII	GGTNACC	1 cut(s)	1140
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	5 cut(s)	251, 304, 332, 849, 925
BstKTI	GATC	6 cut(s)	406, 699, 1357, 1579, 1777, 2104
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
BstMCI	CGRYCG	2 cut(s)	406, 699
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 701, 1301, 1554, 1841
BstNI	CCWGG	3 cut(s)	621, 652, 1614
BstNSI	RCATGY	1 cut(s)	587
BstPI	GGTNACC	1 cut(s)	1140
BstSCI	CCNGG	5 cut(s)	231, 619, 650, 1612, 1965
BstSLI	GKGCMC	2 cut(s)	1888, 2280
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	5 cut(s)	291, 655, 691, 928, 1819
BstV2I	GAAGAC	1 cut(s)	1192
BstX2I	RGATCY	2 cut(s)	1774, 2101
BstYI	RGATCY	2 cut(s)	1774, 2101
Bsu15I	ATCGAT	1 cut(s)	2061
BsuRI	GGCC	6 cut(s)	291, 629, 1542, 1557, 2172, 2340
BsuTUI	ATCGAT	1 cut(s)	2061
BtsI	GCAGTG	2 cut(s)	469, 2049
BtsIMutI	CAGTG	3 cut(s)	469, 1676, 2049
Cac8I	GCNNGC	2 cut(s)	247, 1888
CfoI	GCGC	5 cut(s)	251, 304, 332, 849, 925
Cfr10I	RCCGGY	2 cut(s)	364, 794
Cfr13I	GGNCC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	2061
Csp6I	GTAC	2 cut(s)	1118, 2345
CspAI	ACCGGT	1 cut(s)	794
CviQI	GTAC	2 cut(s)	1118, 2345
DdeI	CTNAG	4 cut(s)	1158, 1219, 2072, 2110
DpnI	GATC	6 cut(s)	405, 698, 1356, 1578, 1776, 2103
DpnII	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
EaeI	YGGCCR	1 cut(s)	1555
Eam1104I	CTCTTC	3 cut(s)	164, 186, 1998
EarI	CTCTTC	3 cut(s)	164, 186, 1998
EciI	GGCGGA	2 cut(s)	20, 799
Eco130I	CCWWGG	1 cut(s)	1653
Eco147I	AGGCCT	1 cut(s)	2340
Eco32I	GATATC	1 cut(s)	2143
Eco91I	GGTNACC	1 cut(s)	1140
EcoO65I	GGTNACC	1 cut(s)	1140
EcoRII	CCWGG	3 cut(s)	619, 650, 1612
EcoRV	GATATC	1 cut(s)	2143
EcoT14I	CCWWGG	1 cut(s)	1653
ErhI	CCWWGG	1 cut(s)	1653
FalI	AAGNNNNNCTT	2 cut(s)	1977, 2009
FauI	CCCGC	2 cut(s)	254, 1895
FauNDI	CATATG	1 cut(s)	1051
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	7 cut(s)	34, 283, 305, 669, 705, 942, 1833
Fsp4HI	GCNGC	7 cut(s)	34, 283, 305, 669, 705, 942, 1833
FspBI	CTAG	2 cut(s)	2244, 2425
FspI	TGCGCA	2 cut(s)	331, 924
GlaI	GCGC	5 cut(s)	250, 303, 331, 848, 924
GluI	GCNGC	7 cut(s)	34, 283, 305, 669, 705, 942, 1833
GsuI	CTGGAG	1 cut(s)	1728
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	6 cut(s)	291, 629, 1542, 1557, 2172, 2340
HapII	CCGG	7 cut(s)	233, 279, 288, 299, 365, 795, 1966
HhaI	GCGC	5 cut(s)	251, 304, 332, 849, 925
Hin6I	GCGC	5 cut(s)	249, 302, 330, 847, 923
HinP1I	GCGC	5 cut(s)	249, 302, 330, 847, 923
HincII	GTYRAC	3 cut(s)	313, 424, 1180
HindII	GTYRAC	3 cut(s)	313, 424, 1180
HinfI	GANTC	6 cut(s)	238, 314, 350, 1670, 1710, 2216
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	7 cut(s)	233, 279, 288, 299, 365, 795, 1966
HphI	GGTGA	8 cut(s)	103, 578, 635, 731, 874, 1134, 1463, 2093
Hpy166II	GTNNAC	4 cut(s)	313, 424, 1180, 1650
Hpy188I	TCNGA	8 cut(s)	136, 504, 645, 1848, 1903, 2101, 2113, 2409
Hpy188III	TCNNGA	2 cut(s)	1444, 1910
Hpy8I	GTNNAC	4 cut(s)	313, 424, 1180, 1650
Hpy99I	CGWCG	2 cut(s)	203, 314
HpyAV	CCTTC	8 cut(s)	238, 484, 814, 1594, 2015, 2119, 2178, 2191
HpyCH4III	ACNGT	7 cut(s)	199, 1009, 1187, 1408, 1684, 1723, 2158
HpyCH4IV	ACGT	7 cut(s)	273, 998, 1120, 1462, 1625, 2002, 2203
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 701, 1301, 1554, 1841
HpyF3I	CTNAG	4 cut(s)	1158, 1219, 2072, 2110
HpySE526I	ACGT	7 cut(s)	273, 998, 1120, 1462, 1625, 2002, 2203
HspAI	GCGC	5 cut(s)	249, 302, 330, 847, 923
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
LguI	GCTCTTC	1 cut(s)	1998
LmnI	GCTCC	3 cut(s)	216, 290, 301
Lsp1109I	GCAGC	5 cut(s)	291, 655, 691, 928, 1819
LweI	GCATC	7 cut(s)	406, 582, 928, 1269, 1483, 2105, 2316
MaeI	CTAG	2 cut(s)	2244, 2425
MaeII	ACGT	7 cut(s)	273, 998, 1120, 1462, 1625, 2002, 2203
MaeIII	GTNAC	5 cut(s)	374, 1140, 1711, 1726, 2177
MalI	GATC	6 cut(s)	405, 698, 1356, 1578, 1776, 2103
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
MboII	GAAGA	9 cut(s)	151, 173, 351, 829, 1005, 1192, 1985, 1997, 2396
MfeI	CAATTG	2 cut(s)	1572, 2189
MflI	RGATCY	2 cut(s)	1774, 2101
MhlI	GDGCHC	2 cut(s)	1888, 2280
MlsI	TGGCCA	1 cut(s)	1557
MluCI	AATT	9 cut(s)	1213, 1370, 1521, 1572, 1589, 1820, 2090, 2130, 2189
MluNI	TGGCCA	1 cut(s)	1557
MlyI	GAGTC	3 cut(s)	232, 308, 1719
MmeI	TCCRAC	5 cut(s)	116, 159, 726, 915, 1742
Mox20I	TGGCCA	1 cut(s)	1557
MroXI	GAANNNNTTC	2 cut(s)	1992, 2025
MscI	TGGCCA	1 cut(s)	1557
MslI	CAYNNNNRTG	2 cut(s)	221, 1067
Msp20I	TGGCCA	1 cut(s)	1557
MspA1I	CMGCKG	1 cut(s)	1937
MspI	CCGG	7 cut(s)	233, 279, 288, 299, 365, 795, 1966
MspR9I	CCNGG	5 cut(s)	233, 621, 652, 1614, 1967
MunI	CAATTG	2 cut(s)	1572, 2189
Mva1269I	GAATGC	2 cut(s)	652, 2025
MvaI	CCWGG	3 cut(s)	621, 652, 1614
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	288, 701, 1301, 1554, 1841
NciI	CCSGG	2 cut(s)	233, 1967
NdeI	CATATG	1 cut(s)	1051
NdeII	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
NlaIV	GGNNCC	4 cut(s)	286, 774, 1296, 1401
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	3 cut(s)	1140, 1711, 1726
NsbI	TGCGCA	2 cut(s)	331, 924
NspI	RCATGY	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	2123
PceI	AGGCCT	1 cut(s)	2340
PciSI	GCTCTTC	1 cut(s)	1998
PctI	GAATGC	2 cut(s)	652, 2025
PdmI	GAANNNNTTC	2 cut(s)	1992, 2025
PfeI	GAWTC	3 cut(s)	350, 1670, 2216
PfoI	TCCNGGA	3 cut(s)	231, 1612, 1965
PinAI	ACCGGT	1 cut(s)	794
PkrI	GCNGC	7 cut(s)	35, 284, 306, 670, 706, 943, 1834
Ple19I	CGATCG	2 cut(s)	406, 699
PleI	GAGTC	3 cut(s)	232, 308, 1718
PpsI	GAGTC	3 cut(s)	232, 308, 1718
Ppu21I	YACGTR	3 cut(s)	1121, 2003, 2204
PshBI	ATTAAT	1 cut(s)	2057
PsiI	TTATAA	1 cut(s)	2375
Psp6I	CCWGG	3 cut(s)	619, 650, 1612
PspEI	GGTNACC	1 cut(s)	1140
PspGI	CCWGG	3 cut(s)	619, 650, 1612
PspN4I	GGNNCC	4 cut(s)	286, 774, 1296, 1401
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	1774, 2101
PvuI	CGATCG	2 cut(s)	406, 699
PvuII	CAGCTG	1 cut(s)	1937
RsaI	GTAC	2 cut(s)	1119, 2346
RsaNI	GTAC	2 cut(s)	1118, 2345
RseI	CAYNNNNRTG	2 cut(s)	221, 1067
SalI	GTCGAC	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	1998
SatI	GCNGC	7 cut(s)	34, 283, 305, 669, 705, 942, 1833
Sau3AI	GATC	6 cut(s)	403, 696, 1354, 1576, 1774, 2101
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	3 cut(s)	232, 308, 1719
ScrFI	CCNGG	5 cut(s)	233, 621, 652, 1614, 1967
SduI	GDGCHC	2 cut(s)	1888, 2280
SfaNI	GCATC	7 cut(s)	406, 582, 928, 1269, 1483, 2105, 2316
SfuI	TTCGAA	1 cut(s)	2123
SmiMI	CAYNNNNRTG	2 cut(s)	221, 1067
Sse9I	AATT	9 cut(s)	1213, 1370, 1521, 1572, 1589, 1820, 2090, 2130, 2189
SseBI	AGGCCT	1 cut(s)	2340
SsiI	CCGC	8 cut(s)	31, 34, 147, 247, 282, 671, 784, 1888
SspMI	CTAG	2 cut(s)	2244, 2425
StuI	AGGCCT	1 cut(s)	2340
StyD4I	CCNGG	5 cut(s)	231, 619, 650, 1612, 1965
StyI	CCWWGG	1 cut(s)	1653
TaaI	ACNGT	7 cut(s)	199, 1009, 1187, 1408, 1684, 1723, 2158
TaiI	ACGT	7 cut(s)	276, 1001, 1123, 1465, 1628, 2005, 2206
TaqI	TCGA	8 cut(s)	312, 324, 406, 878, 1421, 1996, 2061, 2123
TaqII	GACCGA	1 cut(s)	1128
TasI	AATT	9 cut(s)	1213, 1370, 1521, 1572, 1589, 1820, 2090, 2130, 2189
TauI	GCSGC	2 cut(s)	36, 285
TfiI	GAWTC	3 cut(s)	350, 1670, 2216
TscAI	CASTG	3 cut(s)	469, 1683, 2056
TseFI	GTSAC	3 cut(s)	1140, 1711, 1726
TseI	GCWGC	5 cut(s)	304, 668, 704, 941, 1832
Tsp45I	GTSAC	3 cut(s)	1140, 1711, 1726
TspDTI	ATGAA	9 cut(s)	17, 491, 1090, 1445, 1817, 1892, 2034, 2237, 2406
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	3 cut(s)	469, 1683, 2056
VspI	ATTAAT	1 cut(s)	2057
XapI	RAATTY	3 cut(s)	1370, 1589, 2090
XceI	RCATGY	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	2 cut(s)	1992, 2025
XspI	CTAG	2 cut(s)	2244, 2425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.