Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

18222386 .. 18223603

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGGCTGGGTTCCTTCTGTTGTCACGTTTAGTAGTGTCATCACGGCTTGTGTGAAGCAGAGGAATATGGTTGAAGCCATAAGGATTAAGGATGGTATGGTAAGTTGTGGGTACCCAGTTAATTTGGTTGTTGCTACAAGCTTGATGAAGGGTTATTGTGTGCAAGGGAATTTGGAGAGTGCCTTGGATTTGTTCAGTATGATTATAGAGGATGGACTTACTCCAAACAGGGTTACGTATGCAATTCTTGTAGAATACTGCTGTAAGAATGGGAACATGGAAAAGGCTTATGAGTTTTACAGGCAAATGAAAGACATGGATATTTTGCCTGATGTCTACATTGTAAATTATTTGATACGAGGATTTTTGAAATATCGGTCGTTTGAAAATGTGTCTAACTTGTTTGATGAGGCCGTTGAGTGTGGTGTTGCTAATGTTTTCTCATATAATAATATATTATCAAGGCTTTATGGGAACGGTAAAGTAAGTGAAGCTTGTAGTTTATGGGATAAAATGATGTGTAAAGGTGTGGTACCAAATGTAGTATCCTACAATAGCAAGATACATGGCTATTGCAGAATAGGGAATATGGAGCATGCACGCAGTGTATTTGTGGAGATGCTTAAAAGGGGTTTGAAACCAAATTATGTGACTTATTATATCTTGATAAACGGCTACTTCAAGAACGGTGATGTAGAGCATGCCTTTGATGTCTTTGATGATATGGTGGCTGCCAAGATTTCTCCCACAGGCTTCACAGTTGGCGTTGTCATTGATGGCTTGTGCAAAGCTGGTCGTACATCCGAGGCAAGTGACATGCTAAAGAAAATTGTTGGGAGGGGTTTTATTCCGGGATGTATTAGTTACAATAGCATTATCAATGGGTATACCAAGGAGGGTGACATTAATCCTGCACTGGCTGTATACAGAGAAATGTGTGAAGGTGGAGTCTCTCCTAATGTTGTCACGTACACCAGCATTATTAATGGGTTTTGCAAAAGCAATCAAATTGATATGGCTGTGAAAATGTGGAATGAGATGAAAAACAAGGGCATTGAACTGGATGTTACTGCATATTGTGCTCTAATTGATGGGTTTTGTAAAAGACGAGACATGGGAACTGCGGGTGAACTTTTCTTAGAACTCCTTCAAGTTGGTTTATCTCCAAATGTAGCTGTTTACAGTAGGCATGATATCTGGCTTCCGGAGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

406

Amino Acids

45.24

Weight (kDa)

6.46

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	28 - 89	9.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	41 - 89	1.7e-10	PPR repeat family
PPR_1	PF12854	71 - 104	9e-10	PPR repeat
PPR_2	PF13041	78 - 124	8.8e-11	PPR repeat family
PPR_2	PF13041	145 - 185	9e-11	PPR repeat family
PPR_long	PF17177	162 - 276	1.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	168 - 226	1.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	175 - 207	3e-09	PPR repeat
PPR_2	PF13041	179 - 228	3.4e-17	PPR repeat family
PPR	PF01535	182 - 212	4.8e-07	PPR repeat
PPR_1	PF12854	210 - 243	1.9e-11	PPR repeat
PPR_3	PF13812	210 - 253	2.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	217 - 263	5.9e-14	PPR repeat family
PPR	PF01535	217 - 244	1.6e-07	PPR repeat
TPR_24	PF23276	265 - 379	2.4e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	274 - 331	1.6e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	275 - 363	2e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	280 - 312	2.1e-06	PPR repeat
PPR_2	PF13041	286 - 333	7.7e-18	PPR repeat family
PPR	PF01535	287 - 317	3.1e-06	PPR repeat
PPR_1	PF12854	316 - 348	2.7e-13	PPR repeat
PPR_2	PF13041	319 - 368	1.7e-19	PPR repeat family
PPR	PF01535	322 - 352	1.4e-09	PPR repeat
PPR_3	PF13812	344 - 395	2.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	355 - 395	9.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	111, 532
AccB1I	GGYRCC	2 cut(s)	111, 532
AccI	GTMKAC	3 cut(s)	336, 887, 924
AccIII	TCCGGA	1 cut(s)	1204
AciI	CCGC	1 cut(s)	1124
AcsI	RAATTY	1 cut(s)	169
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	4 cut(s)	113, 534, 799, 971
AgsI	TTSAA	7 cut(s)	74, 370, 386, 637, 682, 1058, 1151
AluBI	AGCT	4 cut(s)	141, 494, 791, 1175
AluI	AGCT	4 cut(s)	141, 494, 791, 1175
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	2 cut(s)	955, 1104
Aor13HI	TCCGGA	1 cut(s)	1204
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	1 cut(s)	169
AseI	ATTAAT	2 cut(s)	906, 984
Asp700I	GAANNNNTTC	1 cut(s)	1146
Asp718I	GGTACC	2 cut(s)	111, 532
AsuC2I	CCSGG	1 cut(s)	852
AsuHPI	GGTGA	3 cut(s)	701, 911, 1139
BanI	GGYRCC	2 cut(s)	111, 532
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	4 cut(s)	86, 206, 770, 1085
BceAI	ACGGC	3 cut(s)	60, 398, 688
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	852
BcoDI	GTCTC	2 cut(s)	955, 1104
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme1390I	CCNGG	1 cut(s)	852
BmiI	GGNNCC	3 cut(s)	12, 113, 534
BmrFI	CCNGG	1 cut(s)	852
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	609
BmuI	ACTGGG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	852
BsaAI	YACGTR	2 cut(s)	237, 969
BsaJI	CCNNGG	3 cut(s)	183, 804, 891
BsaWI	WCCGGW	1 cut(s)	1204
Bse1I	ACTGG	3 cut(s)	116, 921, 1065
BseAI	TCCGGA	1 cut(s)	1204
BseDI	CCNNGG	3 cut(s)	183, 804, 891
BseGI	GGATG	5 cut(s)	97, 217, 800, 860, 1069
BseNI	ACTGG	3 cut(s)	116, 921, 1065
BseXI	GCAGC	1 cut(s)	718
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	897
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	2 cut(s)	111, 532
BsiEI	CGRYCG	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiSI	CCGG	2 cut(s)	851, 1205
BsmAI	GTCTC	2 cut(s)	955, 1104
BsnI	GGCC	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp13I	TCCGGA	1 cut(s)	1204
BspACI	CCGC	1 cut(s)	1124
BspANI	GGCC	1 cut(s)	413
BspEI	TCCGGA	1 cut(s)	1204
BspLI	GGNNCC	3 cut(s)	12, 113, 534
BspT107I	GGYRCC	2 cut(s)	111, 532
BsrI	ACTGG	3 cut(s)	116, 921, 1065
BssECI	CCNNGG	3 cut(s)	183, 804, 891
BssNAI	GTATAC	2 cut(s)	888, 925
BssT1I	CCWWGG	2 cut(s)	183, 891
Bst1107I	GTATAC	2 cut(s)	888, 925
Bst4CI	ACNGT	4 cut(s)	479, 689, 760, 1184
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstBAI	YACGTR	2 cut(s)	237, 969
BstC8I	GCNNGC	3 cut(s)	597, 601, 702
BstDEI	CTNAG	1 cut(s)	1138
BstF5I	GGATG	5 cut(s)	97, 217, 800, 860, 1069
BstMAI	GTCTC	2 cut(s)	955, 1104
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	1079
BstNSI	RCATGY	3 cut(s)	599, 704, 820
BstSCI	CCNGG	1 cut(s)	850
BstSNI	TACGTA	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	718
BstZ17I	GTATAC	2 cut(s)	888, 925
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	5 cut(s)	97, 217, 800, 860, 1069
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	610, 914
Cac8I	GCNNGC	3 cut(s)	597, 601, 702
Csp6I	GTAC	4 cut(s)	112, 533, 798, 970
CviAII	CATG	8 cut(s)	277, 316, 566, 596, 701, 817, 1114, 1190
CviQI	GTAC	4 cut(s)	112, 533, 798, 970
DdeI	CTNAG	1 cut(s)	1138
DraI	TTTAAA	1 cut(s)	1213
DraIII	CACNNNGTG	1 cut(s)	605
Eco105I	TACGTA	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	183, 891
Eco32I	GATATC	1 cut(s)	1195
EcoRV	GATATC	1 cut(s)	1195
EcoT14I	CCWWGG	2 cut(s)	183, 891
ErhI	CCWWGG	2 cut(s)	183, 891
FaeI	CATG	8 cut(s)	280, 319, 569, 599, 704, 820, 1117, 1193
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FatI	CATG	8 cut(s)	276, 315, 565, 595, 700, 816, 1113, 1189
FauI	CCCGC	1 cut(s)	1117
FblI	GTMKAC	3 cut(s)	336, 887, 924
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	5 cut(s)	104, 224, 787, 867, 1076
Fsp4HI	GCNGC	1 cut(s)	732
GluI	GCNGC	1 cut(s)	732
GsaI	CCCAGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	851, 1205
Hin1II	CATG	8 cut(s)	280, 319, 569, 599, 704, 820, 1117, 1193
HindIII	AAGCTT	2 cut(s)	139, 492
HinfI	GANTC	1 cut(s)	948
HpaII	CCGG	2 cut(s)	851, 1205
HphI	GGTGA	3 cut(s)	701, 911, 1139
Hpy166II	GTNNAC	6 cut(s)	337, 888, 925, 972, 1130, 1180
Hpy188I	TCNGA	1 cut(s)	805
Hpy188III	TCNNGA	3 cut(s)	664, 682, 1205
Hpy8I	GTNNAC	6 cut(s)	337, 888, 925, 972, 1130, 1180
HpyAV	CCTTC	4 cut(s)	24, 142, 935, 1157
HpyCH4III	ACNGT	4 cut(s)	479, 689, 760, 1184
HpyCH4IV	ACGT	3 cut(s)	26, 236, 968
HpyCH4V	TGCA	8 cut(s)	163, 242, 576, 599, 786, 914, 996, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1079
HpyF3I	CTNAG	1 cut(s)	1138
HpySE526I	ACGT	3 cut(s)	26, 236, 968
Hsp92II	CATG	8 cut(s)	280, 319, 569, 599, 704, 820, 1117, 1193
Kpn2I	TCCGGA	1 cut(s)	1204
KpnI	GGTACC	2 cut(s)	115, 536
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	1 cut(s)	609
MaeII	ACGT	3 cut(s)	26, 236, 968
MaeIII	GTNAC	8 cut(s)	22, 232, 649, 812, 863, 899, 964, 1066
MhlI	GDGCHC	1 cut(s)	1084
MluCI	AATT	8 cut(s)	121, 169, 243, 346, 643, 828, 1008, 1086
MlyI	GAGTC	1 cut(s)	957
MnlI	CCTC	7 cut(s)	54, 202, 353, 403, 799, 831, 889
MroI	TCCGGA	1 cut(s)	1204
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	6 cut(s)	87, 120, 624, 906, 984, 1212
MspI	CCGG	2 cut(s)	851, 1205
MspR9I	CCNGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	1 cut(s)	1079
NciI	CCSGG	1 cut(s)	852
NlaIII	CATG	8 cut(s)	280, 319, 569, 599, 704, 820, 1117, 1193
NlaIV	GGNNCC	3 cut(s)	12, 113, 534
NmuCI	GTSAC	5 cut(s)	22, 649, 812, 899, 964
NspI	RCATGY	3 cut(s)	599, 704, 820
PaeI	GCATGC	2 cut(s)	599, 704
PdmI	GAANNNNTTC	1 cut(s)	1146
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	1 cut(s)	733
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
Ppu21I	YACGTR	2 cut(s)	237, 969
PshBI	ATTAAT	2 cut(s)	906, 984
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	12, 113, 534
RsaI	GTAC	4 cut(s)	113, 534, 799, 971
RsaNI	GTAC	4 cut(s)	112, 533, 798, 970
SaqAI	TTAA	6 cut(s)	87, 120, 624, 906, 984, 1212
SatI	GCNGC	1 cut(s)	732
SchI	GAGTC	1 cut(s)	957
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	1 cut(s)	1084
SetI	ASST	9 cut(s)	29, 143, 239, 496, 529, 793, 946, 971, 1177
SfaNI	GCATC	1 cut(s)	609
SnaBI	TACGTA	1 cut(s)	237
SphI	GCATGC	2 cut(s)	599, 704
Sse9I	AATT	8 cut(s)	121, 169, 243, 346, 643, 828, 1008, 1086
SsiI	CCGC	1 cut(s)	1124
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	2 cut(s)	183, 891
TaaI	ACNGT	4 cut(s)	479, 689, 760, 1184
TaiI	ACGT	3 cut(s)	29, 239, 971
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	8 cut(s)	121, 169, 243, 346, 643, 828, 1008, 1086
Tru1I	TTAA	6 cut(s)	87, 120, 624, 906, 984, 1212
Tru9I	TTAA	6 cut(s)	87, 120, 624, 906, 984, 1212
TscAI	CASTG	2 cut(s)	610, 921
TseFI	GTSAC	5 cut(s)	22, 649, 812, 899, 964
TseI	GCWGC	1 cut(s)	731
Tsp45I	GTSAC	5 cut(s)	22, 649, 812, 899, 964
TspDTI	ATGAA	3 cut(s)	161, 323, 1055
TspRI	CASTG	2 cut(s)	610, 921
VspI	ATTAAT	2 cut(s)	906, 984
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	3 cut(s)	599, 704, 820
XmiI	GTMKAC	3 cut(s)	336, 887, 924
XmnI	GAANNNNTTC	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.