Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39230 AT3G54980 AT3G54980 |
| fragaria_vesca | FvH4_5g25890 FvH4_5g25890 FvH4_5g25890 |
| malus_domestica | MD04G1151000.v1.1 MD12G1164900.v1.1 |
| prunus_persica | Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1 |
| pyrus_communis | pycom04g13670 pycom12g15770 |
| rosa_chinensis | RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401 |
| rosa_laevigata | RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675 |
| rosa_multiflora | Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046 |
| rosa_roxburghii | Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080 |
| rosa_rugosa | Rorug01G0081600 Rorug07G0160300 |
| rosa_samantha | Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400 |
| rosa_wichuraiana | Rw7G025370 Rw7G025380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 386 |
| AccII | CGCG | 2 cut(s) | 79, 322 |
| AciI | CCGC | 2 cut(s) | 79, 272 |
| AcoI | YGGCCR | 1 cut(s) | 216 |
| AfaI | GTAC | 3 cut(s) | 129, 227, 382 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 2 cut(s) | 56, 196 |
| AhlI | ACTAGT | 1 cut(s) | 389 |
| AjnI | CCWGG | 1 cut(s) | 374 |
| AluBI | AGCT | 2 cut(s) | 34, 266 |
| AluI | AGCT | 2 cut(s) | 34, 266 |
| AoxI | GGCC | 1 cut(s) | 216 |
| ApeKI | GCWGC | 1 cut(s) | 263 |
| AseI | ATTAAT | 1 cut(s) | 440 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 356, 420 |
| BauI | CACGAG | 1 cut(s) | 113 |
| BbvI | GCAGC | 1 cut(s) | 275 |
| BciT130I | CCWGG | 1 cut(s) | 376 |
| BcuI | ACTAGT | 1 cut(s) | 389 |
| BfaI | CTAG | 1 cut(s) | 390 |
| BisI | GCNGC | 3 cut(s) | 80, 264, 273 |
| BlsI | GCNGC | 3 cut(s) | 81, 265, 274 |
| BmcAI | AGTACT | 1 cut(s) | 227 |
| Bme1390I | CCNGG | 1 cut(s) | 376 |
| BmiI | GGNNCC | 1 cut(s) | 369 |
| BmrFI | CCNGG | 1 cut(s) | 376 |
| BmsI | GCATC | 1 cut(s) | 259 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BsaAI | YACGTR | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BseBI | CCWGG | 1 cut(s) | 376 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseRI | GAGGAG | 2 cut(s) | 158, 236 |
| BseXI | GCAGC | 1 cut(s) | 275 |
| Bsh1236I | CGCG | 2 cut(s) | 79, 322 |
| BshFI | GGCC | 1 cut(s) | 218 |
| BsiSI | CCGG | 1 cut(s) | 209 |
| BsiWI | CGTACG | 1 cut(s) | 380 |
| BsnI | GGCC | 1 cut(s) | 218 |
| BspACI | CCGC | 2 cut(s) | 79, 272 |
| BspANI | GGCC | 1 cut(s) | 218 |
| BspFNI | CGCG | 2 cut(s) | 79, 322 |
| BspLI | GGNNCC | 1 cut(s) | 369 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssNAI | GTATAC | 1 cut(s) | 387 |
| BssSI | CACGAG | 1 cut(s) | 113 |
| Bst1107I | GTATAC | 1 cut(s) | 387 |
| Bst2BI | CACGAG | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 1 cut(s) | 376 |
| Bst4CI | ACNGT | 1 cut(s) | 417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 269 |
| BstBAI | YACGTR | 1 cut(s) | 384 |
| BstC8I | GCNNGC | 1 cut(s) | 182 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstFNI | CGCG | 2 cut(s) | 79, 322 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 269, 272, 296 |
| BstNI | CCWGG | 1 cut(s) | 376 |
| BstNSI | RCATGY | 1 cut(s) | 172 |
| BstSCI | CCNGG | 1 cut(s) | 374 |
| BstSNI | TACGTA | 1 cut(s) | 384 |
| BstUI | CGCG | 2 cut(s) | 79, 322 |
| BstV1I | GCAGC | 1 cut(s) | 275 |
| BstZ17I | GTATAC | 1 cut(s) | 387 |
| BsuRI | GGCC | 1 cut(s) | 218 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| Cac8I | GCNNGC | 1 cut(s) | 182 |
| CseI | GACGC | 1 cut(s) | 85 |
| Csp6I | GTAC | 3 cut(s) | 128, 226, 381 |
| CviAII | CATG | 2 cut(s) | 169, 174 |
| CviJI | RGCY | 7 cut(s) | 34, 208, 218, 266, 299, 329, 434 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 208, 218, 266, 299, 329, 434 |
| CviQI | GTAC | 3 cut(s) | 128, 226, 381 |
| EaeI | YGGCCR | 1 cut(s) | 216 |
| Eco105I | TACGTA | 1 cut(s) | 384 |
| EcoRII | CCWGG | 1 cut(s) | 374 |
| FaeI | CATG | 2 cut(s) | 172, 177 |
| FaiI | YATR | 9 cut(s) | 43, 45, 60, 62, 100, 125, 170, 175, 387 |
| FatI | CATG | 2 cut(s) | 168, 173 |
| FblI | GTMKAC | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 3 cut(s) | 80, 264, 273 |
| FokI | GGATG | 1 cut(s) | 293 |
| Fsp4HI | GCNGC | 3 cut(s) | 80, 264, 273 |
| FspBI | CTAG | 1 cut(s) | 390 |
| GluI | GCNGC | 3 cut(s) | 80, 264, 273 |
| HaeIII | GGCC | 1 cut(s) | 218 |
| HapII | CCGG | 1 cut(s) | 209 |
| HgaI | GACGC | 1 cut(s) | 85 |
| Hin1II | CATG | 2 cut(s) | 172, 177 |
| HincII | GTYRAC | 1 cut(s) | 75 |
| HindII | GTYRAC | 1 cut(s) | 75 |
| HinfI | GANTC | 3 cut(s) | 310, 317, 404 |
| HpaII | CCGG | 1 cut(s) | 209 |
| HphI | GGTGA | 3 cut(s) | 163, 356, 420 |
| Hpy166II | GTNNAC | 2 cut(s) | 75, 387 |
| Hpy188I | TCNGA | 1 cut(s) | 234 |
| Hpy188III | TCNNGA | 1 cut(s) | 314 |
| Hpy8I | GTNNAC | 2 cut(s) | 75, 387 |
| HpyAV | CCTTC | 4 cut(s) | 190, 229, 235, 381 |
| HpyCH4III | ACNGT | 1 cut(s) | 417 |
| HpyCH4IV | ACGT | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 1 cut(s) | 452 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 269, 272, 296 |
| HpySE526I | ACGT | 1 cut(s) | 383 |
| Hsp92II | CATG | 2 cut(s) | 172, 177 |
| LmnI | GCTCC | 1 cut(s) | 31 |
| LpnPI | CCDG | 6 cut(s) | 33, 222, 327, 361, 388, 444 |
| Lsp1109I | GCAGC | 1 cut(s) | 275 |
| LweI | GCATC | 1 cut(s) | 259 |
| MaeI | CTAG | 1 cut(s) | 390 |
| MaeII | ACGT | 1 cut(s) | 383 |
| MaeIII | GTNAC | 1 cut(s) | 405 |
| MfeI | CAATTG | 1 cut(s) | 291 |
| MluCI | AATT | 1 cut(s) | 291 |
| MlyI | GAGTC | 2 cut(s) | 319, 413 |
| MmeI | TCCRAC | 2 cut(s) | 381, 436 |
| MnlI | CCTC | 7 cut(s) | 86, 99, 136, 193, 205, 214, 248 |
| MseI | TTAA | 2 cut(s) | 18, 440 |
| MspA1I | CMGCKG | 1 cut(s) | 266 |
| MspI | CCGG | 1 cut(s) | 209 |
| MspR9I | CCNGG | 1 cut(s) | 376 |
| MunI | CAATTG | 1 cut(s) | 291 |
| MvaI | CCWGG | 1 cut(s) | 376 |
| MvnI | CGCG | 2 cut(s) | 79, 322 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 269, 272, 296 |
| NlaIII | CATG | 2 cut(s) | 172, 177 |
| NlaIV | GGNNCC | 1 cut(s) | 369 |
| NmeAIII | GCCGAG | 1 cut(s) | 244 |
| NmuCI | GTSAC | 1 cut(s) | 405 |
| NspI | RCATGY | 1 cut(s) | 172 |
| PciI | ACATGT | 1 cut(s) | 168 |
| PfeI | GAWTC | 1 cut(s) | 317 |
| Pfl23II | CGTACG | 1 cut(s) | 380 |
| PkrI | GCNGC | 3 cut(s) | 81, 265, 274 |
| PleI | GAGTC | 2 cut(s) | 318, 412 |
| PpsI | GAGTC | 2 cut(s) | 318, 412 |
| Ppu21I | YACGTR | 1 cut(s) | 384 |
| PscI | ACATGT | 1 cut(s) | 168 |
| PshBI | ATTAAT | 1 cut(s) | 440 |
| Psp6I | CCWGG | 1 cut(s) | 374 |
| PspGI | CCWGG | 1 cut(s) | 374 |
| PspLI | CGTACG | 1 cut(s) | 380 |
| PspN4I | GGNNCC | 1 cut(s) | 369 |
| PvuII | CAGCTG | 1 cut(s) | 266 |
| RsaI | GTAC | 3 cut(s) | 129, 227, 382 |
| RsaNI | GTAC | 3 cut(s) | 128, 226, 381 |
| SaqAI | TTAA | 2 cut(s) | 18, 440 |
| SatI | GCNGC | 3 cut(s) | 80, 264, 273 |
| ScaI | AGTACT | 1 cut(s) | 227 |
| SchI | GAGTC | 2 cut(s) | 319, 413 |
| ScrFI | CCNGG | 1 cut(s) | 376 |
| SetI | ASST | 4 cut(s) | 36, 216, 268, 386 |
| SfaNI | GCATC | 1 cut(s) | 259 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| SnaBI | TACGTA | 1 cut(s) | 384 |
| SpeI | ACTAGT | 1 cut(s) | 389 |
| Sse9I | AATT | 1 cut(s) | 291 |
| SsiI | CCGC | 2 cut(s) | 79, 272 |
| SspMI | CTAG | 1 cut(s) | 390 |
| StyD4I | CCNGG | 1 cut(s) | 374 |
| TaaI | ACNGT | 1 cut(s) | 417 |
| TaiI | ACGT | 1 cut(s) | 386 |
| TasI | AATT | 1 cut(s) | 291 |
| TatI | WGTACW | 1 cut(s) | 225 |
| TauI | GCSGC | 2 cut(s) | 82, 275 |
| TfiI | GAWTC | 1 cut(s) | 317 |
| Tru1I | TTAA | 2 cut(s) | 18, 440 |
| Tru9I | TTAA | 2 cut(s) | 18, 440 |
| TseFI | GTSAC | 1 cut(s) | 405 |
| TseI | GCWGC | 1 cut(s) | 263 |
| Tsp45I | GTSAC | 1 cut(s) | 405 |
| TspDTI | ATGAA | 1 cut(s) | 77 |
| VspI | ATTAAT | 1 cut(s) | 440 |
| XceI | RCATGY | 1 cut(s) | 172 |
| XmiI | GTMKAC | 1 cut(s) | 386 |
| XspI | CTAG | 1 cut(s) | 390 |
| ZrmI | AGTACT | 1 cut(s) | 227 |