Rh4CG174200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002613
Physical Location & Seq
Forward (+)
38011462 .. 38012262
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG174200.1

Sequence Viewer

Length: 801 bp
ATGACTTATAATAGTATTATACATGGGTTTACCAGGGAGGGTGCCATGAATTCTGCACTGAATGTTTATAGAGAAATGTGTGAAGGTGGAGTCACTCCAACTGTTATCACTTACACCAGCCTTATTAATGGGTCATGCAAAAGCAATAAGATAGATCTTGCTTTAGAAATGTGGCATGAAATGAAAAGTAAGGGCATCAAAATGGATGTTACAGCATACTCTGCTATCATTGATGGATTTTGCAAAAGGCGAGACATGAAAAGTGCTCGCGAACTTTTCTCGGAACTTCTGGAAGTTGGTTTATCTCCAAATACAGGTGTTTATACTAGCATGATTTGTGGCTTCCGGAATGTAAATGACATGGAAGCAGCTATTGACTTACATAAGAAAATGATAACTGAAGGCATTCCATGTGATGTGAAAACGTACACTGCATTAATCAATGGACTGCTAAGAAAGGGTGATTTACAATCTGCATCAGATCTTTACTCAAAGATGCTTTCGAAGGGAATCACACCTGATATCAACACATATACAGTTCTAATAAATGGCCTTTGTTGCAAACGACAATTGGAGAAGGCACGCAAAACCTTGGAATACATGAATAGAAGGAGAATGACTGCTAGGGTTCATATTTATACTGCTTTGATTGTTGGGCACTTCAAGGAGGGGAATTTGCAAGAATCGTTTAGGTTGCACGATGAAATGCTAGACAAAGGCCTCGTACCTGATGACATTACTTGTGATATTCTTATAAATGGAAAGTTCAAAGGCATAAGTGCTCTTCCGAGGACTTCATGA

Protein Analysis

266

Amino Acids

29.83

Weight (kDa)

8.69

Isoelectric Point (pI)

28.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 47 1.3e-15 PPR repeat family
PPR_3 PF13812 2 - 43 2.1e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 3 - 95 4.5e-09 Fungal tetratrico peptide repeats
PPR_long PF17177 11 - 155 4.5e-12 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 30 - 62 2.5e-11 PPR repeat
PPR_2 PF13041 33 - 82 4e-17 PPR repeat family
PPR PF01535 36 - 66 1.2e-08 PPR repeat
TPR_24 PF23276 42 - 165 1.4e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 58 - 112 2.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 64 - 95 2e-07 PPR repeat
PPR_2 PF13041 69 - 115 6.1e-11 PPR repeat family
PPR_2 PF13041 103 - 151 3.6e-12 PPR repeat family
PPR_3 PF13812 129 - 183 1.4e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 133 - 235 4.4e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 139 - 186 1.6e-17 PPR repeat family
PPR PF01535 142 - 171 1.2e-06 PPR repeat
PPR_1 PF12854 169 - 201 1.7e-08 PPR repeat
PPR_2 PF13041 210 - 254 7.2e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 9, 755
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 345
AcsI RAATTY 2 cut(s) 49, 673
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 428, 726
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 664, 769
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw21I GWGCWC 2 cut(s) 268, 784
Alw26I GTCTC 1 cut(s) 246
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 2 cut(s) 550, 718
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 2 cut(s) 49, 673
AseI ATTAAT 2 cut(s) 126, 437
Asp700I GAANNNNTTC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 660
BanI GGYRCC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 268, 784
BbvI GCAGC 1 cut(s) 380
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 3 cut(s) 327, 624, 710
BglII AGATCT 2 cut(s) 154, 481
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 204, 485, 486
Bpu14I TTCGAA 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 33, 591, 788
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 33, 591, 788
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 552, 720
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 268, 784
BsiSI CCGG 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 552, 720
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 3 cut(s) 268, 660, 784
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 154, 481
Bsp68I TCGCGA 1 cut(s) 270
BspANI GGCC 2 cut(s) 552, 720
BspEI TCCGGA 1 cut(s) 345
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 797
BspLI GGNNCC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 789
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 33, 591, 788
BssMI GATC 2 cut(s) 154, 481
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 103, 538
Bst6I CTCTTC 1 cut(s) 789
BstAPI GCANNNNNTGC 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 268, 583
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 2 cut(s) 157, 484
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 2 cut(s) 154, 481
BstMWI GCNNNNNNNGC 2 cut(s) 221, 558
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 660
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 154, 481
BstYI RGATCY 2 cut(s) 154, 481
BsuRI GGCC 2 cut(s) 552, 720
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 56, 429
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 268, 583
CciI TCATGA 1 cut(s) 797
Csp6I GTAC 2 cut(s) 427, 725
CviJI RGCY 5 cut(s) 120, 342, 371, 552, 720
CviKI_1 RGCY 5 cut(s) 120, 342, 371, 552, 720
CviQI GTAC 2 cut(s) 427, 725
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 156, 483
DpnII GATC 2 cut(s) 154, 481
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 720
Eco32I GATATC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 3 cut(s) 327, 624, 710
GluI GCNGC 1 cut(s) 369
HaeIII GGCC 2 cut(s) 552, 720
HapII CCGG 1 cut(s) 346
HinfI GANTC 3 cut(s) 90, 510, 683
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 2 cut(s) 30, 429
Hpy188I TCNGA 3 cut(s) 283, 481, 789
Hpy188III TCNNGA 4 cut(s) 269, 290, 346, 798
Hpy8I GTNNAC 2 cut(s) 30, 429
HpyAV CCTTC 5 cut(s) 77, 395, 499, 571, 603
HpyCH4III ACNGT 2 cut(s) 103, 538
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 8 cut(s) 56, 138, 243, 434, 476, 561, 679, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 558
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 345
Kzo9I GATC 2 cut(s) 154, 481
LguI GCTCTTC 1 cut(s) 789
LpnPI CCDG 8 cut(s) 19, 46, 130, 275, 300, 359, 531, 741
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 3 cut(s) 204, 485, 486
MaeI CTAG 3 cut(s) 327, 624, 710
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 2 cut(s) 91, 208
MalI GATC 2 cut(s) 156, 483
MboI GATC 2 cut(s) 154, 481
MboII GAAGA 1 cut(s) 776
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 2 cut(s) 154, 481
MhlI GDGCHC 3 cut(s) 268, 660, 784
MluCI AATT 3 cut(s) 49, 569, 673
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 4 cut(s) 31, 661, 731, 783
MroI TCCGGA 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 126, 437
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 221, 558
NdeII GATC 2 cut(s) 154, 481
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 91
NruI TCGCGA 1 cut(s) 270
NspV TTCGAA 1 cut(s) 503
PagI TCATGA 1 cut(s) 797
PceI AGGCCT 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 510, 683
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PshBI ATTAAT 2 cut(s) 126, 437
PsiI TTATAA 2 cut(s) 9, 755
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 43
PsuI RGATCY 2 cut(s) 154, 481
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 2 cut(s) 428, 726
RsaNI GTAC 2 cut(s) 427, 725
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 2 cut(s) 126, 437
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 154, 481
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 3 cut(s) 268, 660, 784
SetI ASST 8 cut(s) 88, 319, 373, 428, 520, 593, 695, 730
SfaNI GCATC 3 cut(s) 204, 485, 486
SfuI TTCGAA 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 3 cut(s) 49, 569, 673
SseBI AGGCCT 1 cut(s) 720
SspMI CTAG 3 cut(s) 327, 624, 710
StuI AGGCCT 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 2 cut(s) 103, 538
TaiI ACGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 503
TasI AATT 3 cut(s) 49, 569, 673
TfiI GAWTC 2 cut(s) 510, 683
Tru1I TTAA 2 cut(s) 126, 437
Tru9I TTAA 2 cut(s) 126, 437
TscAI CASTG 2 cut(s) 63, 436
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 8 cut(s) 62, 192, 197, 272, 617, 620, 717, 786
TspRI CASTG 2 cut(s) 63, 436
VspI ATTAAT 2 cut(s) 126, 437
XapI RAATTY 2 cut(s) 49, 673
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 3 cut(s) 327, 624, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.