Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

27246353 .. 27252157

Gene Structure 5805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGTTTTGCAAAAGTGCCCGCGAACTTTTCTCGGAACTTCTGGAAGTTGGTCTATTTCCAAATACAGGTGTTTATACCTGAAGTTGGGCTATGTTACAGAAACATACCTGCTGTTGTTACAACTGCAGTTGGCCAAATGGCAATTTCCAAGGGGCAACAAGGAAGGGAAGCACAAAATACTGTGAGGGTATGGCTGCGTAACCAAATACATGCGCATAAGGATTTCTTTCCAAATTGGCGTTGCATGGTTGGTCCTGCCGATGAATGGGTAAGTGATCTCCCGGTTGATTCCGTAGTCCACTGCATATTCAAACCCCGCTTGTGGGTGACCACCGCCAATTGTGCCATTGAGTCCCCAATAAACTCTAAACTTCCATCGAGATCTAGTACAGTCTACAATTTGTTGAGAAGACAATGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mog1

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

9.67

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	21, 319, 336
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	5 cut(s)	67, 86, 267, 324, 325
AgsI	TTSAA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 86, 267, 324, 325
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	5 cut(s)	67, 86, 267, 324, 325
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	5 cut(s)	67, 86, 267, 324, 325
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	277, 383
BspACI	CCGC	3 cut(s)	21, 319, 336
BspANI	GGCC	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	277, 383
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	184, 394
BstC8I	GCNNGC	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	280, 386
BstMBI	GATC	2 cut(s)	277, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	215
BstPI	GGTNACC	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	2 cut(s)	212, 247
CviJI	RGCY	3 cut(s)	91, 135, 196
CviKI_1	RGCY	3 cut(s)	91, 135, 196
CviQI	GTAC	1 cut(s)	390
DpnI	GATC	2 cut(s)	279, 385
DpnII	GATC	2 cut(s)	277, 383
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	328
EcoO65I	GGTNACC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	215, 250
FaiI	YATR	8 cut(s)	77, 94, 107, 193, 213, 219, 248, 308
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	211, 246
FauI	CCCGC	2 cut(s)	28, 326
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	197
FspAI	RTGCGCAY	1 cut(s)	216
FspBI	CTAG	1 cut(s)	387
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	215, 250
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	290, 353
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	301, 397
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	43, 381
Hpy8I	GTNNAC	2 cut(s)	301, 397
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	2 cut(s)	184, 394
HpyCH4V	TGCA	5 cut(s)	11, 128, 246, 306, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
Hsp92II	CATG	2 cut(s)	215, 250
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	277, 383
LpnPI	CCDG	6 cut(s)	28, 53, 93, 123, 270, 297
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	95, 118, 200, 328
MalI	GATC	2 cut(s)	279, 385
MboI	GATC	2 cut(s)	277, 383
MboII	GAAGA	1 cut(s)	423
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	4 cut(s)	144, 235, 340, 400
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	1 cut(s)	180
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	2 cut(s)	277, 383
NlaIII	CATG	2 cut(s)	215, 250
NmuCI	GTSAC	1 cut(s)	328
NsbI	TGCGCA	1 cut(s)	216
NspI	RCATGY	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	277, 383
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	72, 82, 112
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	4 cut(s)	144, 235, 340, 400
SsiI	CCGC	3 cut(s)	21, 319, 336
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	184, 394
TaqI	TCGA	1 cut(s)	380
TasI	AATT	4 cut(s)	144, 235, 340, 400
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	254
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.