Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

9843126 .. 9843941

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG118300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCGTCCAGTACGCCCAGTCTCCCCACGCCGTCGTTTTGCCCTTCTTGGCAGGAGAGGGAGCTTCGAATCGGCTCTGTAGAGATGGAGAGATCTGGTAGAGGTGGCGCCGATATCCGGGACTTGCTTCGGAGTTCCTCAGGGATATCATGGAGACACATCAAAGACATTTCTTTGTGGGAAGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

63

Amino Acids

7.05

Weight (kDa)

6.55

Isoelectric Point (pI)

68.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	5, 108
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	26, 148
AspLEI	GCGC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	107
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	26, 148
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	111
BglII	AGATCT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	2 cut(s)	5, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	9, 18
Bse21I	CCTNAGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	9, 18
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	26, 148
BsmFI	GGGAC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	109
BspT104I	TTCGAA	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	9, 18
BssMI	GATC	1 cut(s)	92
BssNI	GRCGYC	2 cut(s)	5, 108
BstACI	GRCGYC	2 cut(s)	5, 108
BstBI	TTCGAA	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	2 cut(s)	26, 148
BstMBI	GATC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
Bsu36I	CCTNAGG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	2 cut(s)	64, 75
CviKI_1	RGCY	2 cut(s)	64, 75
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	139
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eco32I	GATATC	2 cut(s)	115, 147
Eco81I	CCTNAGG	1 cut(s)	139
EcoRV	GATATC	2 cut(s)	115, 147
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	1 cut(s)	153
FaiI	YATR	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	5, 108
Hin1II	CATG	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	54, 176
HpyF3I	CTNAG	1 cut(s)	139
Hsp92I	GRCGYC	2 cut(s)	5, 108
Hsp92II	CATG	1 cut(s)	153
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	22, 31, 38, 81, 126, 131
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MflI	RGATCY	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	51, 95, 148
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	119
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	117
PluTI	GGCGCC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	3 cut(s)	66, 106, 187
SfcI	CTRYAG	1 cut(s)	78
SfoI	GGCGCC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	67
SspDI	GGCGCC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	117
TaqI	TCGA	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.