Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Forward (+)

36536152 .. 36536678

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGGAGGTTGAGATATATGCTAGTGTTGAATATGTGAACATTGTGTTGACGGCATTGGTTAGGAGGAACATGTTTGAGGAAGCACGTGAGTTGTACGGTACAATGCTTGGGAGAGGAGTTGGTGATTGTGCCATTCTAAATGTCATGATGCGTGCTTGTTTGAAGGAGGGGAAGCCGGAGGCGGCCGAGGAGTATTTTCGGAAGGCAAGGGGGAGAGGGATAGCAGCTGATGCGGCATTGTATGATGTGGCAATTGGGGCTGTTTGTATGAGTCCTGATTCGCGTTTGGCTTTGGTGTTGTTGGGTGAAATGAGAAAAATCAGGTGGGTTCCTTCCAGGCCTACGTCTACTCCAACTGTTATCACTTACACCAGCCTTATTAATGGGTTATGCAAAAGCAATAAAATAGATCTTGCTTTAGAAATGTGGCATGAGATGAAAAGTAAGGGAATCAAAATGGATGTTACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

159

Amino Acids

17.54

Weight (kDa)

8.34

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	118 - 148	7.5e-12	PPR repeat
PPR_2	PF13041	119 - 156	7e-13	PPR repeat family
PPR	PF01535	122 - 152	3.3e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	1 cut(s)	286
AciI	CCGC	2 cut(s)	185, 236
AcoI	YGGCCR	1 cut(s)	186
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	98, 103
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	32, 166
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AoxI	GGCC	2 cut(s)	186, 341
ApeKI	GCWGC	1 cut(s)	227
AseI	ATTAAT	1 cut(s)	384
AsuHPI	GGTGA	2 cut(s)	137, 320
BbrPI	CACGTG	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	340
BfaI	CTAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	3 cut(s)	186, 228, 237
BlsI	GCNGC	3 cut(s)	187, 229, 238
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	141, 223
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	469
BseRI	GAGGAG	2 cut(s)	132, 206
BseX3I	CGGCCG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	188, 343
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	179
BsnI	GGCC	2 cut(s)	188, 343
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	2 cut(s)	185, 236
BspANI	GGCC	2 cut(s)	188, 343
BspFNI	CGCG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	101, 361
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 236, 260
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	188, 343
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	97, 102
CviAII	CATG	3 cut(s)	73, 148, 434
CviJI	RGCY	7 cut(s)	178, 188, 230, 263, 293, 343, 378
CviKI_1	RGCY	7 cut(s)	178, 188, 230, 263, 293, 343, 378
CviQI	GTAC	2 cut(s)	97, 102
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	186
EagI	CGGCCG	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	343
Eco52I	CGGCCG	1 cut(s)	186
Eco72I	CACGTG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	76, 151, 437
FatI	CATG	3 cut(s)	72, 147, 433
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	3 cut(s)	186, 228, 237
Fsp4HI	GCNGC	3 cut(s)	186, 228, 237
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	3 cut(s)	186, 228, 237
HaeIII	GGCC	2 cut(s)	188, 343
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	3 cut(s)	76, 151, 437
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	274, 281, 453
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	2 cut(s)	137, 320
Hpy166II	GTNNAC	3 cut(s)	40, 51, 351
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	2 cut(s)	148, 278
Hpy8I	GTNNAC	3 cut(s)	40, 51, 351
HpyAV	CCTTC	3 cut(s)	160, 199, 345
HpyCH4III	ACNGT	2 cut(s)	101, 361
HpyCH4IV	ACGT	2 cut(s)	88, 347
HpyCH4V	TGCA	2 cut(s)	396, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 236, 260
HpySE526I	ACGT	2 cut(s)	88, 347
Hsp92II	CATG	3 cut(s)	76, 151, 437
Kzo9I	GATC	1 cut(s)	412
LpnPI	CCDG	6 cut(s)	192, 291, 310, 325, 352, 388
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	2 cut(s)	141, 223
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	88, 347
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	60, 73, 110, 163, 175, 184, 212
MseI	TTAA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	233, 236, 260
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	76, 151, 437
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	214
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	343
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	281, 453
PkrI	GCNGC	3 cut(s)	187, 229, 238
PleI	GAGTC	1 cut(s)	282
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	89
PscI	ACATGT	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	98, 103
RsaNI	GTAC	2 cut(s)	97, 102
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	186, 228, 237
Sau3AI	GATC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	5 cut(s)	12, 91, 232, 329, 350
SfaNI	GCATC	2 cut(s)	141, 223
Sse9I	AATT	1 cut(s)	255
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	185, 236
SspMI	CTAG	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	101, 361
TaiI	ACGT	2 cut(s)	91, 350
TasI	AATT	1 cut(s)	255
TauI	GCSGC	2 cut(s)	188, 239
TfiI	GAWTC	2 cut(s)	281, 453
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	384
XceI	RCATGY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.