Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

7237434 .. 7241124

Gene Structure 3691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGCCAGAACCTGTCGGATGCTTTGCAGGTGACTGCAATGTACCTGGAAATGCTACTCTTGACTACTATATTAATTTTGTTGCCATCTATTCGGGAAATAGAGCATTACCTACAAACAAATAGGAAGCCTATCAACACTTCTAAAGATATTCATGGAAATGATGTAAACCTGAGTGAGCACAGTGGCAAGGTTCTTCTGATTGTGAATGTTGCTTCAAATGAAGCTTATGGGCCTTGGCCTTGCTTTGGTCTTCCCTTAAGTCGACGTCTCAATTTCAGCCATCTTCAAGTAGAAGAGACACGTACAGGCGTACTGCCACAAAGGTCCAACAATTACAAGAAACGAAAGACCACAGAGGTAAAAGACTTCCGAAGGCATGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

130

Amino Acids

14.83

Weight (kDa)

9.37

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AatII	GACGTC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	268
AfaI	GTAC	3 cut(s)	44, 307, 315
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflII	CTTAAG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	219, 290
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	275, 293
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	3 cut(s)	4, 233, 239
AseI	ATTAAT	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	4, 233, 327
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	2 cut(s)	94, 291
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	275, 293
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	4, 233, 327
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	6, 235, 241
BsiHKAI	GWGCWC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	275, 293
BsmBI	CGTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	6, 235, 241
Bsp1286I	GDGCHC	1 cut(s)	183
BspANI	GGCC	3 cut(s)	6, 235, 241
BspCNI	CTCAG	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	275, 293
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	6, 235, 241
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	190
BveI	ACCTGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	4, 233, 327
Csp6I	GTAC	3 cut(s)	43, 306, 314
CviAII	CATG	2 cut(s)	155, 380
CviJI	RGCY	6 cut(s)	6, 130, 227, 235, 241, 282
CviKI_1	RGCY	6 cut(s)	6, 130, 227, 235, 241, 282
CviQI	GTAC	3 cut(s)	43, 306, 314
DdeI	CTNAG	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	2 cut(s)	158, 383
FaiI	YATR	4 cut(s)	71, 156, 231, 381
FatI	CATG	2 cut(s)	154, 379
FblI	GTMKAC	1 cut(s)	265
FokI	GGATG	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	6, 235, 241
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	2 cut(s)	158, 383
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	225
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	169, 266
Hpy188I	TCNGA	3 cut(s)	19, 201, 374
Hpy188III	TCNNGA	2 cut(s)	61, 95
Hpy8I	GTNNAC	2 cut(s)	169, 266
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	268, 304
HpyCH4V	TGCA	2 cut(s)	28, 38
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	2 cut(s)	268, 304
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	158, 383
LpnPI	CCDG	7 cut(s)	14, 20, 26, 32, 59, 185, 294
LweI	GCATC	1 cut(s)	10
MaeII	ACGT	2 cut(s)	268, 304
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	188, 245, 278, 308
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	75, 274, 334
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	1 cut(s)	352
MseI	TTAA	2 cut(s)	74, 260
MslI	CAYNNNNRTG	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NlaIII	CATG	2 cut(s)	158, 383
NmuCI	GTSAC	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	4, 233, 327
PstNI	CAGNNNCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	44, 307, 315
RsaNI	GTAC	3 cut(s)	43, 306, 314
RseI	CAYNNNNRTG	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	74, 260
Sau96I	GGNCC	3 cut(s)	4, 233, 327
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	3 cut(s)	75, 274, 334
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	271, 307
TaqI	TCGA	1 cut(s)	265
TasI	AATT	3 cut(s)	75, 274, 334
Tru1I	TTAA	2 cut(s)	74, 260
Tru9I	TTAA	2 cut(s)	74, 260
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	143, 237
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	265
ZraI	GACGTC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.