Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

31707734 .. 31710229

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGAAATCTCACTTCCATTCCTCACTCCTCCCTTCATTCCGTCGCTTCTACCTCTTAAACCCCAAGCCCCTCTCCTCACAACCACCACCGCCGCCGCCGCCGTCGCCGCCGCGAATCCATTCTCCGGCGAACCCAATTCCACAATCCTCCGATTCAACCCAAACCCAACTCCTCAACACTCTTCTTTCCCACAAGACCGATCCCAGTTCCGCTCTCGACCTCCTCAAACGCGCTGAAGCTCACCCAGGCTTTGTCCATGGCGCCGACACCGTCGCCGTCTTGCTTCACATCTTAATGGGCTTTCCAGAGACTCGCGGGCGCGCCAAGACATTGCTTAACCGCTACGTTTCCGGCGACTCCGGCCCTCCTCCGGCAGTCTTTCTCGATCGTTTGGTGGACTGCGCAAAGAGGTTTGGTTTTGATTTAGATTCAGATTCTCTGGTTTTCAGTTACTTGTTGAATAGCTATGTTAGAGCGAATCGAATAGGGGATGCTGTTGATTGCTTTAATAGAATGGTGGAGCTTGAGTTATATGCTAGTGTTGAATATATGAACATTGTGTTGACGGCATTGGTTAGGAGGAATATGTTTGAGGAAGCACGAGAGTTGTATGGTAAAATGGTTGAGAGAGGAGTTGGCGGTGATTGCGCCACTCTACATGTCATGATGCGTGCTTGTTTGAAGGAGGGGAAGCCGGAGGAGGCTGAGGAGTACTTTCGGAAGGCAAGGGGGAGAGGGATAGCAGCTGATGCCGCATTGTATGATGTGGCGATTGGGGCTGTTTGTAAGACTCCTGAATCGCGTTTGGCTTTGGTGTTGTTGGGTGAAATGAGAGAAATGGGGTGGGTTCCTTCCGGGCGTACGTATACTAGTGTGATTGGGGCGTGTGTGAAGCAGGGGAATATGGTGGAGGCGCTAAGGCTCAAGGATGAAATGGTGAGTTGTGGGGAATCGATTGATGTGGTTGTTGCTACAAGCTTGATGAACGGTTATTGTGCGCAAGGGAAGTTGGATGCTGCTTTGGATTTGTTCAACATGATTATGCAGGATGGACTTATTCCTAACAGAATCACTTATGCAACTGTGATAGGATGCTGCTGTAAGAATGAGAACATGGAAAGGGCATATGAGCTTTACACCAAAATGAAACAGATGGGTATTTTGCCTGATGAGTTCATTGTGAATCATTTGGTGCGTGGATTTTTGAAATGTCGGTTACTTGAAGATGCGTCTAAGTTGTTTGACGAGGCAGTTGACTATGGTATTGCAAATGTCTTCTTGTACAATAATTTCTTAGCATGGCTTTGTAGGGAGGGTAAAGTAAGCGAAGCCCGTAGTTTATGGGATAAGATGATGCGTAATGGTGTGATACCTAATGCAGTTTCCTACAACAACATGATACATGGCTATTGCAGAATAGGGGATATGGATTGTGCAAATAATGAATTTTTGGAGATGACACAAAGGGGTTTGGAACCTACTGTTTTTACTTACTCTATTTTGATGAATGGGTATTTCAGGAACGGTAATGCCGAACGTGCTTTTAATGTCTTTGATGATATGGTGGATGCAAAGAAAATCCCCACAGGCTACACAATTAACATTGTCATTGATGGCCTGTGCAAAGTTGGCCAGACATCTGTGGCAAGTGATCTTTTGAAGAAATTTCTTGAGAAGGGTTTTATTCCTGGATGTATGACTTATAATAGTATTATACATGGGTTTTCCAGGGAGGGTGCCATGAATTCTGCACTGAATGTTTATAGAGAAATGTGTGAAGGTGGAGTCACTCCAACTGTTATCACTTACACCAGCCTTATTAATGGGTTATGCAAAAGCAATAAGATAGATCTTGCTTTAGAAATGTGGCATGAAATGAAAAGTAAGGGCATCAAAATGGATGTTAAAGCATACTCTGCTATCATTGATGGGTTTTGCAAAAGGCGAGACTTGAAAAATGCCCGCGAACTTTTCTCGGAACTTCTGGAAGTTGGTTTATCTCCAAATACTGGTGTTTATACTAGCATGATTTGTGGCTTCCGGAATGTAAATGACATGGAAGCAGCTATTGAGTTACATAAGAAAATGATAACTGAAGGCATTCCATGTGACGTGAAAACGTACACTGCCTTAATCAATGGACTGCTAAGAAAGGGTGATTTACAATCTGCATCAGATCTTTACTCAAAGATGCTTTCGAAGGGAATTACACCTGATATCAACACATATACAGTTCTAATAAATGGCCTTTGTTGCAAACGACAATTGGAGAAGGCACGCAAAACCTTGGAATACATGAATAGAAGGAGAATGACTGCTAGGGTTCATATTTATACTGCTTTGATTGTTGGGCACTTCAAGGAGGGGAATTTGCAAGAATCGTTTAGGCTGCACGATGAAATGCTAGACAAAGGCCTCGTACCTGATGACATTACTTGTGATATTCTTATAAATGGAAAGTTCAAAGGCATAAGTGCACTTCCGAGGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

831

Amino Acids

92.79

Weight (kDa)

7.88

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	183 - 228	5e-07	PPR repeat family
PPR	PF01535	288 - 316	6.7e-06	PPR repeat
PPR_3	PF13812	307 - 369	6.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	320 - 368	2.1e-12	PPR repeat family
PPR_1	PF12854	350 - 383	3.8e-07	PPR repeat
PPR	PF01535	357 - 387	4.9e-06	PPR repeat
PPR_2	PF13041	357 - 392	5.3e-08	PPR repeat family
PPR_long	PF17177	413 - 545	5.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	424 - 464	7e-11	PPR repeat family
PPR_3	PF13812	447 - 504	5.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	454 - 480	2.6e-07	PPR repeat
PPR_2	PF13041	458 - 506	3.6e-16	PPR repeat family
PPR_3	PF13812	485 - 537	3.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	489 - 522	6e-11	PPR repeat
PPR	PF01535	496 - 523	2.6e-06	PPR repeat
PPR_2	PF13041	500 - 542	1.7e-10	PPR repeat family
TPR_24	PF23276	543 - 660	2e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	552 - 608	3.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	559 - 591	3.9e-06	PPR repeat
PPR_2	PF13041	566 - 612	1.1e-16	PPR repeat family
PPR_long	PF17177	574 - 720	1.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	595 - 627	6.5e-12	PPR repeat
PPR_2	PF13041	598 - 647	1.2e-17	PPR repeat family
PPR	PF01535	601 - 631	3.2e-09	PPR repeat
PPR_3	PF13812	623 - 677	8.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	629 - 660	1.6e-06	PPR repeat
PPR_2	PF13041	634 - 680	1.8e-09	PPR repeat family
PPR_2	PF13041	668 - 716	1.8e-11	PPR repeat family
PPR_long	PF17177	685 - 816	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	693 - 748	6.8e-09	Pentatricopeptide repeat domain
PPR	PF01535	707 - 736	5.3e-06	PPR repeat
PPR_2	PF13041	707 - 751	7.8e-16	PPR repeat family
PPR_1	PF12854	734 - 766	7.2e-08	PPR repeat
PPR_2	PF13041	775 - 819	3.4e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1704, 2450
Acc16I	TGCGCA	2 cut(s)	403, 999
AccB1I	GGYRCC	2 cut(s)	260, 1736
AccB7I	CCANNNNNTGG	1 cut(s)	2009
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	866
AccII	CGCG	6 cut(s)	112, 231, 315, 321, 802, 1965
AccIII	TCCGGA	1 cut(s)	2040
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	1630
AcsI	RAATTY	4 cut(s)	1445, 1664, 1744, 2368
AcuI	CTGAAG	2 cut(s)	255, 2115
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	5 cut(s)	713, 862, 1283, 2123, 2421
AfiI	CCNNNNNNNGG	3 cut(s)	124, 370, 2009
AflIII	ACRYGT	1 cut(s)	658
AhlI	ACTAGT	1 cut(s)	869
AjiI	CACGTC	1 cut(s)	2113
AjnI	CCWGG	3 cut(s)	244, 1687, 1727
AluBI	AGCT	7 cut(s)	239, 465, 523, 746, 978, 1132, 2066
AluI	AGCT	7 cut(s)	239, 465, 523, 746, 978, 1132, 2066
Alw21I	GWGCWC	1 cut(s)	2479
Alw26I	GTCTC	2 cut(s)	302, 1941
Alw44I	GTGCAC	1 cut(s)	2475
AlwI	GGATC	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	2040
AoxI	GGCC	5 cut(s)	361, 1615, 1630, 2245, 2413
ApaLI	GTGCAC	1 cut(s)	2475
ApeKI	GCWGC	5 cut(s)	743, 1016, 1095, 2063, 2389
ApoI	RAATTY	4 cut(s)	1445, 1664, 1744, 2368
AscI	GGCGCGCC	1 cut(s)	319
AseI	ATTAAT	1 cut(s)	1821
Asp700I	GAANNNNTTC	2 cut(s)	118, 2100
AspLEI	GCGC	8 cut(s)	233, 263, 321, 323, 404, 650, 916, 1000
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	856
AsuHPI	GGTGA	5 cut(s)	233, 653, 836, 949, 2168
AsuII	TTCGAA	1 cut(s)	2198
BaeGI	GKGCMC	2 cut(s)	2355, 2479
BalI	TGGCCA	1 cut(s)	1632
BanI	GGYRCC	2 cut(s)	260, 1736
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	1267
Bbv12I	GWGCWC	1 cut(s)	2479
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	5 cut(s)	755, 1003, 1082, 2075, 2376
BccI	CCATC	4 cut(s)	1043, 1147, 1607, 1922
BceAI	ACGGC	3 cut(s)	85, 260, 582
BciT130I	CCWGG	3 cut(s)	246, 1689, 1729
BcnI	CCSGG	1 cut(s)	856
BcoDI	GTCTC	2 cut(s)	302, 1941
BcuI	ACTAGT	1 cut(s)	869
BfaI	CTAG	5 cut(s)	537, 870, 2022, 2319, 2405
BfoI	RGCGCY	2 cut(s)	264, 917
BglII	AGATCT	2 cut(s)	1849, 2176
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	4 cut(s)	246, 856, 1689, 1729
BmgBI	CACGTC	1 cut(s)	2113
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	4 cut(s)	262, 849, 1476, 1738
BmrFI	CCNGG	4 cut(s)	246, 856, 1689, 1729
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	1267
Bpu10I	CCTNAGC	2 cut(s)	705, 917
Bpu14I	TTCGAA	1 cut(s)	2198
BpuEI	CTTGAG	3 cut(s)	545, 908, 1691
BpuMI	CCSGG	1 cut(s)	856
Bsa29I	ATCGAT	1 cut(s)	953
BsaAI	YACGTR	1 cut(s)	864
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	244, 256, 1728, 2286, 2483
BsaWI	WCCGGW	1 cut(s)	2040
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 370, 2009
Bse1I	ACTGG	2 cut(s)	204, 2014
Bse3DI	GCAATG	1 cut(s)	329
BseAI	TCCGGA	1 cut(s)	2040
BseBI	CCWGG	3 cut(s)	246, 1689, 1729
BseCI	ATCGAT	1 cut(s)	953
BseDI	CCNNGG	5 cut(s)	244, 256, 1728, 2286, 2483
BseGI	GGATG	8 cut(s)	496, 934, 1018, 1054, 1097, 1573, 1697, 1906
BseLI	CCNNNNNNNGG	3 cut(s)	124, 370, 2009
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	204, 2014
BsePI	GCGCGC	1 cut(s)	319
BseRI	GAGGAG	8 cut(s)	17, 64, 161, 212, 357, 645, 713, 722
BseSI	GKGCMC	2 cut(s)	2355, 2479
BseXI	GCAGC	5 cut(s)	755, 1003, 1082, 2075, 2376
BsgI	GTGCAG	2 cut(s)	1734, 2375
Bsh1236I	CGCG	6 cut(s)	112, 231, 315, 321, 802, 1965
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	5 cut(s)	363, 1617, 1632, 2247, 2415
BshNI	GGYRCC	2 cut(s)	260, 1736
BshVI	ATCGAT	1 cut(s)	953
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	2479
BsiSI	CCGG	7 cut(s)	125, 351, 360, 371, 695, 855, 2041
BsiWI	CGTACG	1 cut(s)	860
BslI	CCNNNNNNNGG	3 cut(s)	124, 370, 2009
BsmAI	GTCTC	2 cut(s)	302, 1941
BsmI	GAATGC	1 cut(s)	2100
BsnI	GGCC	5 cut(s)	363, 1617, 1632, 2247, 2415
Bsp119I	TTCGAA	1 cut(s)	2198
Bsp1286I	GDGCHC	2 cut(s)	2355, 2479
Bsp13I	TCCGGA	1 cut(s)	2040
Bsp1407I	TGTACA	1 cut(s)	1281
Bsp143I	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
Bsp19I	CCATGG	1 cut(s)	256
BspANI	GGCC	5 cut(s)	363, 1617, 1632, 2247, 2415
BspCNI	CTCAG	1 cut(s)	697
BspDI	ATCGAT	1 cut(s)	953
BspEI	TCCGGA	1 cut(s)	2040
BspFNI	CGCG	6 cut(s)	112, 231, 315, 321, 802, 1965
BspHI	TCATGA	2 cut(s)	663, 2492
BspLI	GGNNCC	4 cut(s)	262, 849, 1476, 1738
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	2198
BspT107I	GGYRCC	2 cut(s)	260, 1736
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	1281
BsrI	ACTGG	2 cut(s)	204, 2014
BssECI	CCNNGG	5 cut(s)	244, 256, 1728, 2286, 2483
BssHII	GCGCGC	1 cut(s)	319
BssMI	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
BssNAI	GTATAC	1 cut(s)	867
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	256, 2286
Bst1107I	GTATAC	1 cut(s)	867
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	3 cut(s)	246, 1689, 1729
Bst4CI	ACNGT	7 cut(s)	271, 989, 1084, 1483, 1526, 1798, 2233
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	2 cut(s)	749, 1916
BstAUI	TGTACA	1 cut(s)	1281
BstBAI	YACGTR	1 cut(s)	864
BstBI	TTCGAA	1 cut(s)	2198
BstC8I	GCNNGC	5 cut(s)	317, 321, 672, 1963, 2278
BstDEI	CTNAG	5 cut(s)	705, 917, 1233, 1294, 2147
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	8 cut(s)	496, 934, 1018, 1054, 1097, 1573, 1697, 1906
BstFNI	CGCG	6 cut(s)	112, 231, 315, 321, 802, 1965
BstH2I	RGCGCY	2 cut(s)	264, 917
BstHHI	GCGC	8 cut(s)	233, 263, 321, 323, 404, 650, 916, 1000
BstKTI	GATC	5 cut(s)	202, 388, 1654, 1852, 2179
BstMAI	GTCTC	2 cut(s)	302, 1941
BstMBI	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
BstMCI	CGRYCG	1 cut(s)	388
BstNI	CCWGG	3 cut(s)	246, 1689, 1729
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	4 cut(s)	244, 854, 1687, 1727
BstSLI	GKGCMC	2 cut(s)	2355, 2479
BstSNI	TACGTA	1 cut(s)	864
BstUI	CGCG	6 cut(s)	112, 231, 315, 321, 802, 1965
BstV1I	GCAGC	5 cut(s)	755, 1003, 1082, 2075, 2376
BstV2I	GAAGAC	1 cut(s)	1267
BstX2I	RGATCY	2 cut(s)	1849, 2176
BstYI	RGATCY	2 cut(s)	1849, 2176
BstZ17I	GTATAC	1 cut(s)	867
Bsu15I	ATCGAT	1 cut(s)	953
BsuRI	GGCC	5 cut(s)	363, 1617, 1632, 2247, 2415
BsuTUI	ATCGAT	1 cut(s)	953
BtgI	CCRYGG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	2113
BtsCI	GGATG	8 cut(s)	496, 934, 1018, 1054, 1097, 1573, 1697, 1906
BtsI	GCAGTG	1 cut(s)	2124
BtsIMutI	CAGTG	2 cut(s)	1751, 2124
Cac8I	GCNNGC	5 cut(s)	317, 321, 672, 1963, 2278
CciI	TCATGA	2 cut(s)	663, 2492
CfoI	GCGC	8 cut(s)	233, 263, 321, 323, 404, 650, 916, 1000
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	953
CseI	GACGC	1 cut(s)	1218
Csp6I	GTAC	5 cut(s)	712, 861, 1282, 2122, 2420
CviQI	GTAC	5 cut(s)	712, 861, 1282, 2122, 2420
DdeI	CTNAG	5 cut(s)	705, 917, 1233, 1294, 2147
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	5 cut(s)	201, 387, 1653, 1851, 2178
DpnII	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
EaeI	YGGCCR	1 cut(s)	1630
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco105I	TACGTA	1 cut(s)	864
Eco130I	CCWWGG	2 cut(s)	256, 2286
Eco147I	AGGCCT	1 cut(s)	2415
Eco32I	GATATC	1 cut(s)	2218
Eco57I	CTGAAG	2 cut(s)	255, 2115
EcoRI	GAATTC	1 cut(s)	1744
EcoRII	CCWGG	3 cut(s)	244, 1687, 1727
EcoRV	GATATC	1 cut(s)	2218
EcoT14I	CCWWGG	2 cut(s)	256, 2286
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	256, 2286
FauI	CCCGC	2 cut(s)	308, 1970
FauNDI	CATATG	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	866
FokI	GGATG	8 cut(s)	503, 941, 1025, 1061, 1104, 1580, 1704, 1913
FspBI	CTAG	5 cut(s)	537, 870, 2022, 2319, 2405
FspI	TGCGCA	2 cut(s)	403, 999
GlaI	GCGC	8 cut(s)	232, 262, 320, 322, 403, 649, 915, 999
HaeII	RGCGCY	2 cut(s)	264, 917
HaeIII	GGCC	5 cut(s)	363, 1617, 1632, 2247, 2415
HapII	CCGG	7 cut(s)	125, 351, 360, 371, 695, 855, 2041
HgaI	GACGC	1 cut(s)	1218
HhaI	GCGC	8 cut(s)	233, 263, 321, 323, 404, 650, 916, 1000
Hin1I	GRCGYC	1 cut(s)	261
Hin6I	GCGC	8 cut(s)	231, 261, 319, 321, 402, 648, 914, 998
HinP1I	GCGC	8 cut(s)	231, 261, 319, 321, 402, 648, 914, 998
HincII	GTYRAC	2 cut(s)	564, 1255
HindII	GTYRAC	2 cut(s)	564, 1255
HindIII	AAGCTT	1 cut(s)	976
HpaII	CCGG	7 cut(s)	125, 351, 360, 371, 695, 855, 2041
HphI	GGTGA	5 cut(s)	233, 653, 836, 949, 2168
Hpy166II	GTNNAC	6 cut(s)	397, 564, 867, 1255, 2124, 2477
Hpy188I	TCNGA	6 cut(s)	151, 433, 720, 1978, 2176, 2484
Hpy8I	GTNNAC	6 cut(s)	397, 564, 867, 1255, 2124, 2477
Hpy99I	CGWCG	3 cut(s)	45, 106, 275
HpyCH4III	ACNGT	7 cut(s)	271, 989, 1084, 1483, 1526, 1798, 2233
HpyCH4IV	ACGT	5 cut(s)	345, 863, 1537, 2112, 2120
HpyF3I	CTNAG	5 cut(s)	705, 917, 1233, 1294, 2147
HpySE526I	ACGT	5 cut(s)	345, 863, 1537, 2112, 2120
Hsp92I	GRCGYC	1 cut(s)	261
HspAI	GCGC	8 cut(s)	231, 261, 319, 321, 402, 648, 914, 998
KasI	GGCGCC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	2040
Kzo9I	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	5 cut(s)	755, 1003, 1082, 2075, 2376
MaeI	CTAG	5 cut(s)	537, 870, 2022, 2319, 2405
MaeII	ACGT	5 cut(s)	345, 863, 1537, 2112, 2120
MaeIII	GTNAC	5 cut(s)	449, 1215, 1786, 2073, 2108
MalI	GATC	5 cut(s)	201, 387, 1653, 1851, 2178
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
MboII	GAAGA	4 cut(s)	173, 1235, 1267, 1672
MfeI	CAATTG	1 cut(s)	2264
MflI	RGATCY	2 cut(s)	1849, 2176
MhlI	GDGCHC	2 cut(s)	2355, 2479
MlsI	TGGCCA	1 cut(s)	1632
MluCI	AATT	9 cut(s)	135, 1288, 1445, 1596, 1664, 1744, 2205, 2264, 2368
MluNI	TGGCCA	1 cut(s)	1632
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	4 cut(s)	304, 350, 784, 1794
MmeI	TCCRAC	2 cut(s)	990, 1817
Mox20I	TGGCCA	1 cut(s)	1632
MroI	TCCGGA	1 cut(s)	2040
MroXI	GAANNNNTTC	2 cut(s)	118, 2100
MscI	TGGCCA	1 cut(s)	1632
MseI	TTAA	9 cut(s)	56, 293, 336, 507, 1545, 1599, 1821, 1905, 2132
MslI	CAYNNNNRTG	4 cut(s)	293, 1040, 1142, 1895
Msp20I	TGGCCA	1 cut(s)	1632
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	7 cut(s)	125, 351, 360, 371, 695, 855, 2041
MspR9I	CCNGG	4 cut(s)	246, 856, 1689, 1729
MunI	CAATTG	1 cut(s)	2264
Mva1269I	GAATGC	1 cut(s)	2100
MvaI	CCWGG	3 cut(s)	246, 1689, 1729
MvnI	CGCG	6 cut(s)	112, 231, 315, 321, 802, 1965
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	856
NcoI	CCATGG	1 cut(s)	256
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
NlaIV	GGNNCC	4 cut(s)	262, 849, 1476, 1738
NmuCI	GTSAC	2 cut(s)	1786, 2108
NsbI	TGCGCA	2 cut(s)	403, 999
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	2198
PagI	TCATGA	2 cut(s)	663, 2492
PalAI	GGCGCGCC	1 cut(s)	319
PauI	GCGCGC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	2415
PciI	ACATGT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 1530
PctI	GAATGC	1 cut(s)	2100
PdmI	GAANNNNTTC	2 cut(s)	118, 2100
Pfl23II	CGTACG	1 cut(s)	860
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	2009
PfoI	TCCNGGA	1 cut(s)	1687
Ple19I	CGATCG	1 cut(s)	388
PleI	GAGTC	4 cut(s)	304, 350, 784, 1793
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	4 cut(s)	304, 350, 784, 1793
Ppu21I	YACGTR	1 cut(s)	864
PscI	ACATGT	1 cut(s)	658
PshBI	ATTAAT	1 cut(s)	1821
PsiI	TTATAA	2 cut(s)	1704, 2450
Psp6I	CCWGG	3 cut(s)	244, 1687, 1727
PspGI	CCWGG	3 cut(s)	244, 1687, 1727
PspLI	CGTACG	1 cut(s)	860
PspN4I	GGNNCC	4 cut(s)	262, 849, 1476, 1738
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	1849, 2176
PsyI	GACNNNGTC	1 cut(s)	269
PteI	GCGCGC	1 cut(s)	319
PvuI	CGATCG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	5 cut(s)	713, 862, 1283, 2123, 2421
RsaNI	GTAC	5 cut(s)	712, 861, 1282, 2122, 2420
RseI	CAYNNNNRTG	4 cut(s)	293, 1040, 1142, 1895
SaqAI	TTAA	9 cut(s)	56, 293, 336, 507, 1545, 1599, 1821, 1905, 2132
Sau3AI	GATC	5 cut(s)	199, 385, 1651, 1849, 2176
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	4 cut(s)	304, 350, 784, 1794
ScrFI	CCNGG	4 cut(s)	246, 856, 1689, 1729
SduI	GDGCHC	2 cut(s)	2355, 2479
SfoI	GGCGCC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	2198
SgsI	GGCGCGCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	4 cut(s)	293, 1040, 1142, 1895
SmlI	CTYRAG	3 cut(s)	524, 923, 1670
SmoI	CTYRAG	3 cut(s)	524, 923, 1670
SnaBI	TACGTA	1 cut(s)	864
SpeI	ACTAGT	1 cut(s)	869
Sse9I	AATT	9 cut(s)	135, 1288, 1445, 1596, 1664, 1744, 2205, 2264, 2368
SseBI	AGGCCT	1 cut(s)	2415
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	5 cut(s)	537, 870, 2022, 2319, 2405
StuI	AGGCCT	1 cut(s)	2415
StyD4I	CCNGG	4 cut(s)	244, 854, 1687, 1727
StyI	CCWWGG	2 cut(s)	256, 2286
TaaI	ACNGT	7 cut(s)	271, 989, 1084, 1483, 1526, 1798, 2233
TaiI	ACGT	5 cut(s)	348, 866, 1540, 2115, 2123
TaqI	TCGA	5 cut(s)	216, 384, 481, 953, 2198
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	9 cut(s)	135, 1288, 1445, 1596, 1664, 1744, 2205, 2264, 2368
TatI	WGTACW	2 cut(s)	711, 1281
TauI	GCSGC	6 cut(s)	94, 97, 100, 109, 112, 755
Tru1I	TTAA	9 cut(s)	56, 293, 336, 507, 1545, 1599, 1821, 1905, 2132
Tru9I	TTAA	9 cut(s)	56, 293, 336, 507, 1545, 1599, 1821, 1905, 2132
TscAI	CASTG	2 cut(s)	1758, 2131
TseFI	GTSAC	2 cut(s)	1786, 2108
TseI	GCWGC	5 cut(s)	743, 1016, 1095, 2063, 2389
Tsp45I	GTSAC	2 cut(s)	1786, 2108
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	1758, 2131
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	2009
VneI	GTGCAC	1 cut(s)	2475
VspI	ATTAAT	1 cut(s)	1821
XapI	RAATTY	4 cut(s)	1445, 1664, 1744, 2368
XceI	RCATGY	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	866
XmnI	GAANNNNTTC	2 cut(s)	118, 2100
XspI	CTAG	5 cut(s)	537, 870, 2022, 2319, 2405
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.