Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000692.1

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

17537 .. 21536

Gene Structure 4000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000692.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgggctttccagagactcgtgggcgtgccaagacattgcttaaccgctacgtttccggcgactccggccctcctccggcagtctttatcgatcgtttgctggactgcgcaaagagaatggtggagcttgagatatatgctggtgttgaatatatgaacatcgtgttgacggcattggttaggaggaaaatgtttgaggaagcacgagagttgagaggaagccggagggccgaggagtacttttggaagggggaggcaagggggagagggatagcagctgatgcggcattgtatgatgtggcaattggggctgtttgtaagagtcctgattcgcgtttggctttggtgttgttaggtgaaatgagagaaatggggtgggttccttccgggcaaaggcaggagagctgctgtttctggtgtttgaggtgtggcttcaaacatccaattccacagttattgttcatgcttgcagacatagattgcttctacattcaaggtttcacatgctactgttgtaagaaattggtctgcaaggtcgcatttgaggtgttgtcaattgtgaagttgctgctgctgacattccaatcatctttcttagatatcgggaacagcgagctatcaaaatttgcaagtattttgaattcaggaaaatttgggtacagcaagaaggaagatctggaattactgttattttacagtaatcaggaaattgggaaaaaatatgaaataggtaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

246

Amino Acids

27.85

Weight (kDa)

8.24

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	109
AccII	CGCG	1 cut(s)	334
AciI	CCGC	2 cut(s)	46, 284
AcsI	RAATTY	3 cut(s)	623, 640, 650
AfaI	GTAC	2 cut(s)	239, 659
AfiI	CCNNNNNNNGG	2 cut(s)	76, 393
AgsI	TTSAA	4 cut(s)	149, 436, 494, 640
AluBI	AGCT	4 cut(s)	127, 278, 405, 616
AluI	AGCT	4 cut(s)	127, 278, 405, 616
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	67, 228
ApeKI	GCWGC	4 cut(s)	275, 405, 568, 571
ApoI	RAATTY	3 cut(s)	623, 640, 650
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	68, 228
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	368
BauI	CACGAG	2 cut(s)	18, 204
BbvI	GCAGC	4 cut(s)	287, 392, 555, 558
BceAI	ACGGC	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	8
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	5 cut(s)	276, 285, 406, 569, 572
BlsI	GCNGC	5 cut(s)	277, 286, 407, 570, 573
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	68, 228
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	388
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 393
Bse3DI	GCAATG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	76, 393
BseMI	GCAATG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	63, 248
BseXI	GCAGC	4 cut(s)	287, 392, 555, 558
Bsh1236I	CGCG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	69, 230
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	5 cut(s)	57, 66, 77, 223, 387
BslI	CCNNNNNNNGG	2 cut(s)	76, 393
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	69, 230
Bsp143I	GATC	2 cut(s)	91, 673
BspACI	CCGC	2 cut(s)	46, 284
BspANI	GGCC	2 cut(s)	69, 230
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	91, 673
BssSI	CACGAG	2 cut(s)	18, 204
Bst2BI	CACGAG	2 cut(s)	18, 204
Bst4CI	ACNGT	4 cut(s)	453, 512, 687, 698
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	27, 468, 614
BstDEI	CTNAG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	94, 676
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	91, 673
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 281, 284, 308
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	287, 392, 555, 558
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	69, 230
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	27, 468, 614
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	68, 228
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	238, 658
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	2 cut(s)	463, 504
CviQI	GTAC	2 cut(s)	238, 658
DdeI	CTNAG	1 cut(s)	595
DpnI	GATC	2 cut(s)	93, 675
DpnII	GATC	2 cut(s)	91, 673
Eco32I	GATATC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	601
FaeI	CATG	2 cut(s)	466, 507
FaiI	YATR	9 cut(s)	136, 138, 153, 155, 294, 464, 476, 505, 723
FatI	CATG	2 cut(s)	462, 503
Fnu4HI	GCNGC	5 cut(s)	276, 285, 406, 569, 572
FokI	GGATG	1 cut(s)	426
Fsp4HI	GCNGC	5 cut(s)	276, 285, 406, 569, 572
FspI	TGCGCA	1 cut(s)	109
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	5 cut(s)	276, 285, 406, 569, 572
HaeIII	GGCC	2 cut(s)	69, 230
HapII	CCGG	5 cut(s)	57, 66, 77, 223, 387
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	466, 507
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	4 cut(s)	16, 62, 322, 329
HpaII	CCGG	5 cut(s)	57, 66, 77, 223, 387
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	6 cut(s)	11, 326, 604, 645, 677, 704
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	3 cut(s)	241, 393, 661
HpyCH4III	ACNGT	4 cut(s)	453, 512, 687, 698
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	470, 531, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 281, 284, 308
HpyF3I	CTNAG	1 cut(s)	595
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	466, 507
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	91, 673
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	4 cut(s)	287, 392, 555, 558
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	51
MalI	GATC	2 cut(s)	93, 675
MboI	GATC	2 cut(s)	91, 673
MboII	GAAGA	1 cut(s)	683
MfeI	CAATTG	2 cut(s)	303, 555
MflI	RGATCY	1 cut(s)	673
MluCI	AATT	9 cut(s)	303, 444, 521, 555, 623, 640, 650, 680, 708
MlyI	GAGTC	3 cut(s)	10, 56, 331
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	5 cut(s)	57, 66, 77, 223, 387
MspR9I	CCNGG	1 cut(s)	388
MunI	CAATTG	2 cut(s)	303, 555
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	4 cut(s)	66, 281, 284, 308
NciI	CCSGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	91, 673
NlaIII	CATG	2 cut(s)	466, 507
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	109
NspI	RCATGY	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 609
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	5 cut(s)	277, 286, 407, 570, 573
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	3 cut(s)	10, 56, 330
PpsI	GAGTC	3 cut(s)	10, 56, 330
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	68, 228
PsuI	RGATCY	1 cut(s)	673
PvuI	CGATCG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	239, 659
RsaNI	GTAC	2 cut(s)	238, 658
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	5 cut(s)	276, 285, 406, 569, 572
Sau3AI	GATC	2 cut(s)	91, 673
Sau96I	GGNCC	2 cut(s)	68, 228
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	3 cut(s)	10, 56, 331
ScrFI	CCNGG	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	9 cut(s)	303, 444, 521, 555, 623, 640, 650, 680, 708
SsiI	CCGC	2 cut(s)	46, 284
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	4 cut(s)	453, 512, 687, 698
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	90
TasI	AATT	9 cut(s)	303, 444, 521, 555, 623, 640, 650, 680, 708
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	4 cut(s)	275, 405, 568, 571
TspDTI	ATGAA	3 cut(s)	170, 451, 738
XapI	RAATTY	3 cut(s)	623, 640, 650
XceI	RCATGY	1 cut(s)	507
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.