Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

521179 .. 524422

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00432870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGTCCAGTATGCCCGGTCTCCCTACGCCGTCATTTCTGCCTTCTTCGCTGGAGCGGGAGCTTCTAATCGGCTCCGTAGAGATGGAGAGATTTGGTAGAGGCAGCGCCAATATTCGGGACTTGCTTCGGAGTTCCTCAAGTCCAATTTCGTTCTTGAGCTTTTCGAGAGTTTCACATGCTACTGTTGTAAGAAATTGGTCTGCAAGGTCTGAAGAGAAGGAGAAGATTGAATCTGTAAATCAAGAGTTCTCCCCATTGTCTCATATATGTTATGGAGTCCAGGTCATTTTGGGATTGGATCAAGGAATTTTTGGGGGTGAACGTGTGCCTCCAATGCAAGATATTCATGGAAATGATGTAAACCTAAGTGAGCACAGTGGCAAGGTTCTTCTGATTGTGAATGTTGCTCAAAATGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

141

Amino Acids

15.38

Weight (kDa)

5.77

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	58
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	2 cut(s)	64, 162
AluI	AGCT	2 cut(s)	64, 162
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	26, 267
AlwI	GGATC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	26, 267
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	18, 284
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	18, 284
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	124, 178
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	26, 267
BsmFI	GGGAC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	187, 380
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	26, 267
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 337
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	16, 282
BstV1I	GCAGC	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	385
CfoI	GCGC	1 cut(s)	110
CviAII	CATG	2 cut(s)	179, 350
CviJI	RGCY	3 cut(s)	64, 75, 162
CviKI_1	RGCY	3 cut(s)	64, 75, 162
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	182, 353
FaiI	YATR	7 cut(s)	14, 180, 267, 269, 271, 276, 351
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	178, 349
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	182, 353
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	233, 279
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	323, 364
Hpy188I	TCNGA	3 cut(s)	132, 214, 396
Hpy188III	TCNNGA	4 cut(s)	119, 157, 168, 245
Hpy8I	GTNNAC	2 cut(s)	323, 364
HpyAV	CCTTC	2 cut(s)	54, 214
HpyCH4III	ACNGT	2 cut(s)	187, 380
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	206, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 337
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	182, 353
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	3 cut(s)	55, 61, 80
LpnPI	CCDG	5 cut(s)	22, 31, 38, 269, 296
Lsp1109I	GCAGC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	325
MalI	GATC	1 cut(s)	303
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	1 cut(s)	301
MboII	GAAGA	4 cut(s)	39, 227, 238, 383
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	4 cut(s)	147, 196, 309, 421
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	3 cut(s)	95, 148, 342
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	18, 284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	49, 337
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	182, 353
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	18, 284
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	7 cut(s)	66, 164, 212, 288, 328, 369, 390
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	139, 157
SmoI	CTYRAG	2 cut(s)	139, 157
Sse9I	AATT	4 cut(s)	147, 196, 309, 421
SsiI	CCGC	1 cut(s)	58
SspI	AATATT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	16, 282
TaaI	ACNGT	2 cut(s)	187, 380
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	167
TasI	AATT	4 cut(s)	147, 196, 309, 421
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.