Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

36551189 .. 36552551

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002576

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTTTCAGTTACTTGTTGAATAGCTATGTTAGAGCGAATCGAATAGGGGGTGCTGTTGATTGCTTTAACAGAATGGTGGAGGTTGAGATATATGCTAGTGTTGAATATGTGAACATTGTGTTGACGGCATTGGTTAGGAGGAACATGTTTGAGGAAGCACGTGAGTTGTACGGTACAATGCTTGGGAGAGGAGTTGGTGATTGTGCCATTCTAAATGTCATGATGCGTGCTTGTTTGAAGGAGGGGAAGCCGGAGGCGGCCGAGGAGTATTTTCGGAAGGCAAGGGGGAGAGGGATAGCAGCTGATGCGGCATTGTATGATGTGGCAATTGGGGCTGTTTGTATGAGTCCTGATTCGCGTTTGGCTTTGGTGTTGTTGGGTGAAATGAGAAAAATCAGGTGGGTTCCTTCCAGGCCTACGTCTACTCCAACTGTTATCACTTACACCAGCCTTATTAATGGGTTATGCAAAAGCAATAAAATAGATCTTGCTTTAGAAATGTGGCATGAGATGAAAAGTTCATGCTACTGTTGTAAGAAATTGGTCTGCAAGGTCTGGGGAGAAGGAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

8.55

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	143 - 173	1e-11	PPR repeat
PPR_2	PF13041	144 - 174	1.9e-09	PPR repeat family
PPR	PF01535	147 - 175	1.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	260, 311
AcoI	YGGCCR	1 cut(s)	261
AcvI	CACGTG	1 cut(s)	164
AfaI	GTAC	2 cut(s)	173, 178
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	22, 107, 241
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	2 cut(s)	27, 305
AluI	AGCT	2 cut(s)	27, 305
AoxI	GGCC	2 cut(s)	261, 416
ApeKI	GCWGC	1 cut(s)	302
AseI	ATTAAT	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	212, 395
BbrPI	CACGTG	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	415
BfaI	CTAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	3 cut(s)	261, 303, 312
BlsI	GCNGC	3 cut(s)	262, 304, 313
Bme1390I	CCNGG	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	216, 298
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	207, 281
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	263, 418
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	254
BsnI	GGCC	2 cut(s)	263, 418
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	2 cut(s)	260, 311
BspANI	GGCC	2 cut(s)	263, 418
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	3 cut(s)	176, 436, 533
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 311, 335
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	263, 418
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	172, 177
CviAII	CATG	4 cut(s)	148, 223, 509, 525
CviJI	RGCY	8 cut(s)	27, 253, 263, 305, 338, 368, 418, 453
CviKI_1	RGCY	8 cut(s)	27, 253, 263, 305, 338, 368, 418, 453
CviQI	GTAC	2 cut(s)	172, 177
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	418
Eco52I	CGGCCG	1 cut(s)	261
Eco72I	CACGTG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	151, 226, 512, 528
FatI	CATG	4 cut(s)	147, 222, 508, 524
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	3 cut(s)	261, 303, 312
Fsp4HI	GCNGC	3 cut(s)	261, 303, 312
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	3 cut(s)	261, 303, 312
HaeIII	GGCC	2 cut(s)	263, 418
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	4 cut(s)	151, 226, 512, 528
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	40, 349, 356
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	212, 395
Hpy166II	GTNNAC	3 cut(s)	115, 126, 426
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	223, 353
Hpy8I	GTNNAC	3 cut(s)	115, 126, 426
HpyAV	CCTTC	5 cut(s)	235, 274, 420, 560, 566
HpyCH4III	ACNGT	3 cut(s)	176, 436, 533
HpyCH4IV	ACGT	2 cut(s)	163, 422
HpyCH4V	TGCA	2 cut(s)	471, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 311, 335
HpySE526I	ACGT	2 cut(s)	163, 422
Hsp92II	CATG	4 cut(s)	151, 226, 512, 528
Kzo9I	GATC	1 cut(s)	487
LpnPI	CCDG	7 cut(s)	267, 366, 385, 400, 427, 463, 544
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	216, 298
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	2 cut(s)	163, 422
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	2 cut(s)	330, 542
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	8 cut(s)	76, 135, 148, 185, 238, 250, 259, 287
MseI	TTAA	2 cut(s)	69, 459
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	308, 311, 335
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	151, 226, 512, 528
NlaIV	GGNNCC	1 cut(s)	408
NmeAIII	GCCGAG	1 cut(s)	289
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	418
PciI	ACATGT	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	40, 356
PkrI	GCNGC	3 cut(s)	262, 304, 313
PleI	GAGTC	1 cut(s)	357
PmaCI	CACGTG	1 cut(s)	164
PmlI	CACGTG	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	357
Ppu21I	YACGTR	1 cut(s)	164
PscI	ACATGT	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	173, 178
RsaNI	GTAC	2 cut(s)	172, 177
SaqAI	TTAA	2 cut(s)	69, 459
SatI	GCNGC	3 cut(s)	261, 303, 312
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	415
SetI	ASST	8 cut(s)	29, 87, 166, 307, 404, 425, 558, 577
SfaNI	GCATC	2 cut(s)	216, 298
Sse9I	AATT	2 cut(s)	330, 542
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	260, 311
SspMI	CTAG	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	176, 436, 533
TaiI	ACGT	2 cut(s)	166, 425
TaqI	TCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	330, 542
TauI	GCSGC	2 cut(s)	263, 314
TfiI	GAWTC	2 cut(s)	40, 356
Tru1I	TTAA	2 cut(s)	69, 459
Tru9I	TTAA	2 cut(s)	69, 459
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	513, 530
VspI	ATTAAT	1 cut(s)	459
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.