Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Forward (+)

34356408 .. 34357941

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38146

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGCTTTCCAGAGACTCGCGGGCGCGCCAAGACATTGCTTAACCGCTACGTTTCCGGCGACTCCGGCCCTCCTCCTCCGGCAGTCCTTCTCGATCGTTTGCTGGACTGCGCAGAGAGCTATGTTAGAGCGAACCGAATAGGGGATGCTGTTGATTGCTTTAATAGAATGGTGGAGCTTGAGATATATGCTGGTGCTGGTGTTGAATATATGAACATTGTGTTGACGGCATTGGTTAGGAGGAATATGTTTGAGGAAGCACGAGACTTGTATGGTAAAATGGTTGAGAGAGGAGTTGGCGGTGATTGCGCCACTCTAAATGTCATGATGCGTGCTTGTTTGAAGGAGGGGAAGCCGGAGGAGTACTTTCGGAAGGCAAGGGGGAGAGGGATAGCAGCTGATGCCGCATTGTATGATGTGGCCATTGGGGCTGTTTGTAAGACTCCCGAATCGAGTTTGGCTTTGGTGTTGTTGGCTGAAATGAGAGAAATGGGGTGGGTTCCTTCCGCGCGTACGTACACTAGTGTGATTGGGGCGTGTGTGAAGCAGGGGAATATGGTGGAGGCGCTAAGGCTCAAGGATGAAATGGTGAGTTCTGGGGAATCGATTGATTTGGTTGTTGCTACCAGCTTGATGAAGGGTTATTGTGCGCAAGGGAAGTTGGATGCTGCTTTGGATTTGTTCAACATGATCATGCAGGATGGACTTATTCCTAACAGAATCACTCATGCAACTGTGATAGGATGCTGCTGTAAGAATGGGAACATGGAAAGGGCATATGAGCTTTACACCAAAATGAAACGGATGGATGCGTCTAAGTTGTTTGACGAGGCAGTTGACTACGGTATTGCAAATGTCTTGTTGTACAATAATTTCTTAGCATGGCGTTGTAGGGAGAGTAAAGTAAGCAAAGCGCGTAGTTTATGGGATAAGATGATGCGTAATGGTGTGATACCTAATGCAGTTTCCTACAACAACATGATACATGGCTATTGCACAATAGGGGATATGGATTGTGCAAATAATGAATTTTTGGAGATGACACAAAGGGGTTTGGAACCTACTGTTTTTACTTACTCTATTTTGATGAATGGGTATTTCAGGAACGGTAATGCCGAACGTGCTTTTAATGTCTTTGATGATATGGTGGATGCAAAGAAAATCCCCACAGGCTACACAATTAACATTGTCATTGATGGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

401

Amino Acids

44.52

Weight (kDa)

5.95

Isoelectric Point (pI)

25.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 115	1.7e-08	PPR repeat family
PPR_2	PF13041	134 - 182	5.8e-06	PPR repeat family
PPR_2	PF13041	172 - 216	5.6e-08	PPR repeat family
PPR	PF01535	172 - 200	2.7e-06	PPR repeat
PPR_3	PF13812	191 - 253	5.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	204 - 252	1.7e-10	PPR repeat family
PPR_1	PF12854	234 - 267	8.9e-08	PPR repeat
PPR_long	PF17177	249 - 383	1.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	285 - 324	5.9e-08	PPR repeat family
PPR_3	PF13812	308 - 365	4.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	315 - 341	2e-06	PPR repeat
PPR_2	PF13041	319 - 367	6e-16	PPR repeat family
PPR_3	PF13812	346 - 398	2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	350 - 383	2.5e-11	PPR repeat
PPR	PF01535	357 - 384	1.1e-06	PPR repeat
PPR_2	PF13041	361 - 401	8.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	112, 651
AccII	CGCG	5 cut(s)	21, 27, 509, 511, 916
AciI	CCGC	5 cut(s)	21, 46, 300, 405, 507
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	1028
AfaI	GTAC	4 cut(s)	365, 514, 518, 866
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	206, 343, 685
AhlI	ACTAGT	1 cut(s)	521
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	5 cut(s)	120, 178, 398, 630, 784
AluI	AGCT	5 cut(s)	120, 178, 398, 630, 784
Alw26I	GTCTC	2 cut(s)	8, 258
AoxI	GGCC	3 cut(s)	67, 420, 1198
ApeKI	GCWGC	3 cut(s)	395, 668, 747
ApoI	RAATTY	1 cut(s)	1028
AscI	GGCGCGCC	1 cut(s)	25
AspLEI	GCGC	8 cut(s)	27, 29, 113, 311, 511, 568, 652, 916
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	314, 601
BalI	TGGCCA	1 cut(s)	422
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	407, 655, 734
BccI	CCATC	3 cut(s)	695, 799, 1190
BceAI	ACGGC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	8, 258
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	4 cut(s)	396, 405, 669, 748
BlsI	GCNGC	4 cut(s)	397, 406, 670, 749
BmcAI	AGTACT	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	501, 1059
BmsI	GCATC	8 cut(s)	136, 318, 391, 655, 734, 799, 927, 1141
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	2 cut(s)	200, 560
Bsa29I	ATCGAT	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	605
BseGI	GGATG	8 cut(s)	151, 586, 670, 706, 749, 810, 814, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	35
BsePI	GCGCGC	1 cut(s)	25
BseRI	GAGGAG	4 cut(s)	63, 66, 306, 374
BseXI	GCAGC	3 cut(s)	407, 655, 734
Bsh1236I	CGCG	5 cut(s)	21, 27, 509, 511, 916
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	69, 422, 1200
BshVI	ATCGAT	1 cut(s)	605
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	4 cut(s)	57, 66, 80, 356
BsiWI	CGTACG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	8, 258
BsnI	GGCC	3 cut(s)	69, 422, 1200
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	2 cut(s)	94, 690
BspACI	CCGC	5 cut(s)	21, 46, 300, 405, 507
BspANI	GGCC	3 cut(s)	69, 422, 1200
BspDI	ATCGAT	1 cut(s)	605
BspFNI	CGCG	5 cut(s)	21, 27, 509, 511, 916
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	501, 1059
BsrDI	GCAATG	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	864
BssHII	GCGCGC	1 cut(s)	25
BssMI	GATC	2 cut(s)	94, 690
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst4CI	ACNGT	4 cut(s)	736, 845, 1066, 1109
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	23, 27, 333
BstDEI	CTNAG	3 cut(s)	569, 816, 877
BstF5I	GGATG	8 cut(s)	151, 586, 670, 706, 749, 810, 814, 1156
BstFNI	CGCG	5 cut(s)	21, 27, 509, 511, 916
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	8 cut(s)	27, 29, 113, 311, 511, 568, 652, 916
BstKTI	GATC	2 cut(s)	97, 693
BstMAI	GTCTC	2 cut(s)	8, 258
BstMBI	GATC	2 cut(s)	94, 690
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 117, 306, 401, 404, 428, 1121
BstSNI	TACGTA	1 cut(s)	516
BstUI	CGCG	5 cut(s)	21, 27, 509, 511, 916
BstV1I	GCAGC	3 cut(s)	407, 655, 734
Bsu15I	ATCGAT	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	69, 422, 1200
BsuTUI	ATCGAT	1 cut(s)	605
BtsCI	GGATG	8 cut(s)	151, 586, 670, 706, 749, 810, 814, 1156
Cac8I	GCNNGC	3 cut(s)	23, 27, 333
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	8 cut(s)	27, 29, 113, 311, 511, 568, 652, 916
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	605
CseI	GACGC	1 cut(s)	801
Csp6I	GTAC	4 cut(s)	364, 513, 517, 865
CviAII	CATG	8 cut(s)	325, 688, 694, 728, 766, 882, 979, 986
CviQI	GTAC	4 cut(s)	364, 513, 517, 865
DdeI	CTNAG	3 cut(s)	569, 816, 877
DpnI	GATC	2 cut(s)	96, 692
DpnII	GATC	2 cut(s)	94, 690
EaeI	YGGCCR	1 cut(s)	420
Eco105I	TACGTA	1 cut(s)	516
FaeI	CATG	8 cut(s)	328, 691, 697, 731, 769, 885, 982, 989
FatI	CATG	8 cut(s)	324, 687, 693, 727, 765, 881, 978, 985
FauI	CCCGC	1 cut(s)	14
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	4 cut(s)	396, 405, 669, 748
FokI	GGATG	8 cut(s)	158, 593, 677, 713, 756, 817, 821, 1163
Fsp4HI	GCNGC	4 cut(s)	396, 405, 669, 748
FspBI	CTAG	1 cut(s)	522
FspI	TGCGCA	2 cut(s)	112, 651
GlaI	GCGC	8 cut(s)	26, 28, 112, 310, 510, 567, 651, 915
GluI	GCNGC	4 cut(s)	396, 405, 669, 748
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	69, 422, 1200
HapII	CCGG	4 cut(s)	57, 66, 80, 356
HgaI	GACGC	1 cut(s)	801
HhaI	GCGC	8 cut(s)	27, 29, 113, 311, 511, 568, 652, 916
Hin1II	CATG	8 cut(s)	328, 691, 697, 731, 769, 885, 982, 989
Hin6I	GCGC	8 cut(s)	25, 27, 111, 309, 509, 566, 650, 914
HinP1I	GCGC	8 cut(s)	25, 27, 111, 309, 509, 566, 650, 914
HincII	GTYRAC	2 cut(s)	225, 838
HindII	GTYRAC	2 cut(s)	225, 838
HinfI	GANTC	6 cut(s)	16, 62, 442, 449, 602, 720
HpaII	CCGG	4 cut(s)	57, 66, 80, 356
HphI	GGTGA	2 cut(s)	314, 601
Hpy166II	GTNNAC	3 cut(s)	225, 519, 838
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	5 cut(s)	11, 92, 325, 446, 1102
Hpy8I	GTNNAC	3 cut(s)	225, 519, 838
HpyAV	CCTTC	5 cut(s)	98, 337, 367, 513, 631
HpyCH4III	ACNGT	4 cut(s)	736, 845, 1066, 1109
HpyCH4IV	ACGT	3 cut(s)	51, 515, 1120
HpyCH4V	TGCA	7 cut(s)	697, 731, 851, 962, 996, 1019, 1154
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 117, 306, 401, 404, 428, 1121
HpyF3I	CTNAG	3 cut(s)	569, 816, 877
HpySE526I	ACGT	3 cut(s)	51, 515, 1120
Hsp92II	CATG	8 cut(s)	328, 691, 697, 731, 769, 885, 982, 989
HspAI	GCGC	8 cut(s)	25, 27, 111, 309, 509, 566, 650, 914
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	94, 690
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	3 cut(s)	407, 655, 734
LweI	GCATC	8 cut(s)	136, 318, 391, 655, 734, 799, 927, 1141
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	3 cut(s)	51, 515, 1120
MalI	GATC	2 cut(s)	96, 692
MboI	GATC	2 cut(s)	94, 690
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	3 cut(s)	871, 1028, 1179
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	3 cut(s)	10, 56, 436
MmeI	TCCRAC	1 cut(s)	642
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	4 cut(s)	42, 162, 1128, 1182
MslI	CAYNNNNRTG	3 cut(s)	524, 692, 794
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	4 cut(s)	57, 66, 80, 356
MvnI	CGCG	5 cut(s)	21, 27, 509, 511, 916
MwoI	GCNNNNNNNGC	7 cut(s)	66, 117, 306, 401, 404, 428, 1121
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	2 cut(s)	94, 690
NlaIII	CATG	8 cut(s)	328, 691, 697, 731, 769, 885, 982, 989
NlaIV	GGNNCC	2 cut(s)	501, 1059
NsbI	TGCGCA	2 cut(s)	112, 651
OliI	CACNNNNGTG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	324
PalAI	GGCGCGCC	1 cut(s)	25
PauI	GCGCGC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 1113
PfeI	GAWTC	3 cut(s)	449, 602, 720
Pfl23II	CGTACG	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	397, 406, 670, 749
Ple19I	CGATCG	1 cut(s)	97
PleI	GAGTC	3 cut(s)	10, 56, 436
PpsI	GAGTC	3 cut(s)	10, 56, 436
Ppu21I	YACGTR	1 cut(s)	516
PspLI	CGTACG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	501, 1059
PspPI	GGNCC	1 cut(s)	68
PteI	GCGCGC	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	4 cut(s)	365, 514, 518, 866
RsaNI	GTAC	4 cut(s)	364, 513, 517, 865
RseI	CAYNNNNRTG	3 cut(s)	524, 692, 794
SaqAI	TTAA	4 cut(s)	42, 162, 1128, 1182
SatI	GCNGC	4 cut(s)	396, 405, 669, 748
Sau3AI	GATC	2 cut(s)	94, 690
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	3 cut(s)	10, 56, 436
SfaNI	GCATC	8 cut(s)	136, 318, 391, 655, 734, 799, 927, 1141
SgsI	GGCGCGCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	524, 692, 794
SmlI	CTYRAG	2 cut(s)	179, 575
SmoI	CTYRAG	2 cut(s)	179, 575
SnaBI	TACGTA	1 cut(s)	516
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	3 cut(s)	871, 1028, 1179
SsiI	CCGC	5 cut(s)	21, 46, 300, 405, 507
SspMI	CTAG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	736, 845, 1066, 1109
TaiI	ACGT	3 cut(s)	54, 518, 1123
TaqI	TCGA	3 cut(s)	93, 452, 605
TasI	AATT	3 cut(s)	871, 1028, 1179
TatI	WGTACW	2 cut(s)	363, 864
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	3 cut(s)	449, 602, 720
Tru1I	TTAA	4 cut(s)	42, 162, 1128, 1182
Tru9I	TTAA	4 cut(s)	42, 162, 1128, 1182
TseI	GCWGC	3 cut(s)	395, 668, 747
TspDTI	ATGAA	6 cut(s)	227, 597, 650, 812, 1041, 1103
TspGWI	ACGGA	1 cut(s)	817
XapI	RAATTY	1 cut(s)	1028
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.