Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

32713601 .. 32714045

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGCTTTCCAGAGACTCGTGGGCGTGCCAAGACATTGCTTAACCGCTACGTTTCCGGCGACTCCGGCCCTCCTCCGGCAGTCTTTCTTGATCGTCTGCTGGACTGCGCAAAGAGAATGGTGGAGCTTGAGATATATGCTGGTGTTGAATATATGAACATCGTGTTGACGGCATTGGTTAGGAGGAATATGTTTGAGGAAGCACGAGAGTTGTATGGTACAATGCTTGGGAGAGGAGTTGGTGATTGTGCCACTCTACATGTCATGATGCGTGCTTGTTTGAAGGAGAGGAAGCCGGAGGGCCGAGGAGCACTTTTGGAAGGCAAGGGGGAGAGGGGTAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

115

Amino Acids

12.75

Weight (kDa)

8.9

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	109
AciI	CCGC	1 cut(s)	46
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	149, 283
AluBI	AGCT	2 cut(s)	127, 345
AluI	AGCT	2 cut(s)	127, 345
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	67, 301
ApeKI	GCWGC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	68, 301
AsuHPI	GGTGA	1 cut(s)	254
BauI	CACGAG	2 cut(s)	18, 204
Bbv12I	GWGCWC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	68, 301
BmsI	GCATC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	35
BseRI	GAGGAG	3 cut(s)	63, 249, 321
BshFI	GGCC	2 cut(s)	69, 303
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	57, 66, 77, 296
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	69, 303
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	2 cut(s)	69, 303
BspHI	TCATGA	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	91
BssSI	CACGAG	2 cut(s)	18, 204
Bst2BI	CACGAG	2 cut(s)	18, 204
BstC8I	GCNNGC	2 cut(s)	27, 273
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	69, 303
Cac8I	GCNNGC	2 cut(s)	27, 273
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	68, 301
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	260, 265
CviJI	RGCY	6 cut(s)	6, 69, 127, 295, 303, 345
CviKI_1	RGCY	6 cut(s)	6, 69, 127, 295, 303, 345
CviQI	GTAC	1 cut(s)	219
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
FaeI	CATG	2 cut(s)	263, 268
FaiI	YATR	8 cut(s)	136, 138, 153, 155, 191, 216, 261, 266
FatI	CATG	2 cut(s)	259, 264
Fnu4HI	GCNGC	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	343
FspI	TGCGCA	1 cut(s)	109
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	2 cut(s)	69, 303
HapII	CCGG	4 cut(s)	57, 66, 77, 296
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	263, 268
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	16, 62
HpaII	CCGG	4 cut(s)	57, 66, 77, 296
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	11, 89, 265
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	277, 314
HpyCH4IV	ACGT	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	263, 268
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	124, 308
LpnPI	CCDG	7 cut(s)	24, 70, 79, 86, 90, 126, 309
LweI	GCATC	1 cut(s)	258
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	10, 56
MnlI	CCTC	9 cut(s)	81, 84, 177, 190, 227, 282, 292, 299, 327
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	4 cut(s)	57, 66, 77, 296
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	263, 268
NmeAIII	GCCGAG	1 cut(s)	329
NsbI	TGCGCA	1 cut(s)	109
NspI	RCATGY	1 cut(s)	263
PagI	TCATGA	1 cut(s)	264
PciI	ACATGT	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	2 cut(s)	10, 56
PpsI	GAGTC	2 cut(s)	10, 56
PscI	ACATGT	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	68, 301
PvuII	CAGCTG	1 cut(s)	345
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	68, 301
SchI	GAGTC	2 cut(s)	10, 56
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	3 cut(s)	54, 129, 347
SfaNI	GCATC	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	1 cut(s)	46
TaiI	ACGT	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	170
XceI	RCATGY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.