Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002613

Physical Location & Seq

Genomic Coordinates Reverse (-)

32703716 .. 32706205

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG298700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2490 bp

ATGAAATCTCACTTCCATTCCTCACTCCTCCCTTCACTCCGTCGCTTCTACCTCTTAAACCCCAAGCCCCTCTCCTCACAACCACCACCGCCGCCGCCGCCGCCGCAAATCCATTCTCCGGCGAACCCAATTCCACAATCCTCCGATTCAACCCAAACCCAACTCCTCAACACTCTTCTTTCCCACAAGACCGATCCCAGTTCCGCTCTCGACCTCCTCAAACGCGCTGAAGCTCACCCAGGCTTTGTCCACGGCGCCGACACCGTCGCCGTCTTGCTTCACATCTTAATGGGCTTTCCAGAGACTCGCGGGCGCGCCAAGACATTGCTTAACCGCTACGTTTCCGGCGACTCCGGCCCGACTCCGGCAGTCTTTCTCGATCGTTTGCTGGACTGCGCAAAGAGGTTCGGTTTTGATTTAGATTCAGATTCTCTGGTTTTCAGTTACTTGTTGAATAGCTATGTTAGAGCGAATCGAATAGGGGATGCTGTTGATTGCTTTAATAGAATGGTGGAGCTTGAGTTATATGCTGGTGTTGAATATATGAACATTGTGTTGACGGCATTGGTTAGGAGGAATATGTTTGAGGAAGCACGAGAGTTGTATGGTAAAATGGTTGAGAGAGGAGTTGGCGGTGATTGCGCCACTCTACATGTCATGATGCGTGCTTGTTTGAAGGAGGGGAAGCCGGAGGAGGCTGAGGAGTACTTTCGGAAGGCAAGGGGGAGAGGGATAGCAGCTGATGCGGCATTGTATGATGCGGCAATTGGGGCTGTTTGTAAGACTCCCGAATCGCGTTTGGCTTTGGTGTTGTTGGGTGAAATGAGAGAAATGGGGTGGGTTCCTTCCGGGCATACGTATACTAGTGTGATTGGGGCGTGTGTGAAGCAGGGGAATATGGTGGAGGCGCTAAGGCTCAAGGATGAAATGGTGAGTTGTGGGGAATCGATTGATGTGGTTGTTGCTACAAGCTTGATGAAGGGTTATTGTGCGCAAGGGAAGTTGGATGCTGCTTTGGATTTGTTCAACATGATTATGCAGGATGGACTTATTCCTAACAGAATCACTTATGCAACTGTGATAGGATGCTGCTGTAAGAGTGGGAACATGGAAAGGGCATATGAGCTTTACACCAAAATGAAACAGATGGGTATTTTGCCTGATGAGTTCATTGTGAATCATTTGGTGCGTGGATTTTTGAAATGTCGGTTACTTGAAGATGCGTCTAAGTTGTTTGACGAGGCAGTTGACTACGGTATTGCAAATGTCTTCTTGTACAATAATTTCTTAGCATGGCTTTGTAGGGAGGGTAAAGTAAGCGAAGCCCGTAGTTTATGGGATAAGATGATGCATAATGGTGTGATACCTAATGCAGTTTCCTACAACAACATGATACATGGCTATTGCAGAATAGGGGGTATGGATTGTGCAAATAATGAATTTTTGGAGATGACACAAAGGGGTTTGGAACCTACTGTTTTTACTTACTCTATTTTGATGAATGGGTATTTCAGGAACGGTAATGCCGAACGTGCTTTTAATGTCTTTGATGATATGGTGGATGCAAAGAAAATCCCCACAGGCTACACAATTAACATTGTCATTGATGGCCTGTGCAAAGTTGGCCAGACATCTGTGGCAAGTGATCTTTTGAAGAAATTTCTTGAGAAGGGTTTTATTCCTGGATGTATGACTTATAATAGTATTATACATGGGTTTTCCAGGGAGGGTGCCATGAATTCTGCACTGAATGTTTATAGAGAAATGTGTGAAGGTGGAGTCACTCCAACTGTTATCACTTACACCAGCCTTATTAATGGGTTATGCAAAAGCAATAAGATAGATCTTGCTTTAGAAATGTGGCATGAAATGAAAAGTAAGGGCATCAAAATGGATGTTACAGCATACTCTGCTATCATTGATGGGTTTTGCAAAAGGCGAGACATGAAAAGTGCCCGCGAACTTTTCTCGGAACTTCTGGAAGTTGGTTTATCTCCAAATACAGGTGTTTATACTAGCATGATTTGTGGCTTCCGGAATGTAAATGACTTGGAAGCAGCTATTGAGTTACATAAGAAAATGATAACTGAAGGCATTCCATGTGATGTGAAAACGTACACTGCATTAATCAATGGACTTCTAAGAAAGGGTGATTTACAATCTGCATCAGATCTTTACTCAAAGATGCTTTTGAAGGGAATTACACCTGATATCAACACATATACAGTTCTAATAAATGGCCTTTGTTGCAAACGACAATTGGAGAAGGCACGCAAAACCTTGGAATACATGAATAGAAGGAGAATGACTGCTAGGGTTCATATTTATACTGCTTTGATTGTTGGGCACTTCAAGGAGGGGAATTTGCAAGAATCGTTTAGGTTGCACGATGAAATGCTAGACAAAGGCCTCGTACCTGATGACATTACTTGTGATATTCTTATAAATGGAAAGTTCAAAGGCATAAGTGCTCTTCCGAGGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

829

Amino Acids

92.29

Weight (kDa)

7.69

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	182 - 226	5.9e-07	PPR repeat family
PPR	PF01535	286 - 314	6.8e-06	PPR repeat
PPR_3	PF13812	305 - 365	9.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	318 - 366	4.3e-12	PPR repeat family
PPR_1	PF12854	348 - 381	3.6e-08	PPR repeat
PPR_2	PF13041	352 - 390	1.6e-09	PPR repeat family
PPR	PF01535	355 - 385	7.6e-07	PPR repeat
PPR_2	PF13041	422 - 470	8.7e-15	PPR repeat family
PPR_1	PF12854	452 - 478	6.7e-06	PPR repeat
PPR_2	PF13041	456 - 504	3.3e-15	PPR repeat family
PPR_3	PF13812	483 - 535	3.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	487 - 520	6e-11	PPR repeat
PPR	PF01535	494 - 521	2.6e-06	PPR repeat
PPR_2	PF13041	498 - 540	1.2e-10	PPR repeat family
TPR_24	PF23276	540 - 658	1.8e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	550 - 606	3.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	557 - 589	3.8e-06	PPR repeat
PPR_2	PF13041	564 - 610	1.1e-16	PPR repeat family
PPR_long	PF17177	572 - 718	2e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	593 - 625	6.5e-12	PPR repeat
PPR_2	PF13041	596 - 645	1.5e-17	PPR repeat family
PPR	PF01535	599 - 629	3.2e-09	PPR repeat
TPR_24	PF23276	612 - 728	2.7e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	621 - 675	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	627 - 658	9.4e-07	PPR repeat
PPR_2	PF13041	632 - 678	2.9e-10	PPR repeat family
PPR_2	PF13041	666 - 714	4.2e-11	PPR repeat family
PPR_3	PF13812	691 - 746	2.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	702 - 749	3.7e-16	PPR repeat family
PPR_1	PF12854	732 - 764	7.2e-08	PPR repeat
PPR_2	PF13041	773 - 817	3.4e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39230 AT3G54980 AT3G54980
fragaria_vesca	FvH4_5g25890 FvH4_5g25890 FvH4_5g25890
malus_domestica	MD04G1151000.v1.1 MD12G1164900.v1.1
prunus_persica	Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1
pyrus_communis	pycom04g13670 pycom12g15770
rosa_chinensis	RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401
rosa_laevigata	RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675
rosa_multiflora	Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046
rosa_roxburghii	Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080
rosa_rugosa	Rorug01G0081600 Rorug07G0160300
rosa_samantha	Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400
rosa_wichuraiana	Rw7G025370 Rw7G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1698, 2444
Acc16I	TGCGCA	2 cut(s)	397, 993
AccB1I	GGYRCC	2 cut(s)	254, 1730
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	860
AccII	CGCG	5 cut(s)	225, 309, 315, 796, 1959
AccIII	TCCGGA	1 cut(s)	2034
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	1624
AcsI	RAATTY	4 cut(s)	1439, 1658, 1738, 2362
AcuI	CTGAAG	2 cut(s)	249, 2109
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	4 cut(s)	707, 1277, 2117, 2415
AfiI	CCNNNNNNNGG	3 cut(s)	118, 364, 2003
AflIII	ACRYGT	1 cut(s)	652
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	3 cut(s)	238, 1681, 1721
AluBI	AGCT	7 cut(s)	233, 459, 517, 740, 972, 1126, 2060
AluI	AGCT	7 cut(s)	233, 459, 517, 740, 972, 1126, 2060
Alw21I	GWGCWC	1 cut(s)	2473
Alw26I	GTCTC	2 cut(s)	296, 1935
AlwI	GGATC	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	2034
AoxI	GGCC	5 cut(s)	355, 1609, 1624, 2239, 2407
ApeKI	GCWGC	4 cut(s)	737, 1010, 1089, 2057
ApoI	RAATTY	4 cut(s)	1439, 1658, 1738, 2362
AscI	GGCGCGCC	1 cut(s)	313
AseI	ATTAAT	2 cut(s)	1815, 2126
Asp700I	GAANNNNTTC	1 cut(s)	2094
AspLEI	GCGC	8 cut(s)	227, 257, 315, 317, 398, 644, 910, 994
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	850
AsuHPI	GGTGA	5 cut(s)	227, 647, 830, 943, 2162
BaeGI	GKGCMC	2 cut(s)	1957, 2349
BalI	TGGCCA	1 cut(s)	1626
BanI	GGYRCC	2 cut(s)	254, 1730
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	1261
Bbv12I	GWGCWC	1 cut(s)	2473
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	4 cut(s)	749, 997, 1076, 2069
BccI	CCATC	4 cut(s)	1037, 1141, 1601, 1916
BceAI	ACGGC	3 cut(s)	254, 268, 576
BciT130I	CCWGG	3 cut(s)	240, 1683, 1723
BcnI	CCSGG	1 cut(s)	850
BcoDI	GTCTC	2 cut(s)	296, 1935
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	4 cut(s)	864, 2016, 2313, 2399
BfoI	RGCGCY	2 cut(s)	258, 911
BglII	AGATCT	2 cut(s)	1843, 2170
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	4 cut(s)	240, 850, 1683, 1723
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	4 cut(s)	256, 843, 1470, 1732
BmrFI	CCNGG	4 cut(s)	240, 850, 1683, 1723
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	1261
Bpu10I	CCTNAGC	2 cut(s)	699, 911
BpuEI	CTTGAG	3 cut(s)	539, 902, 1685
BpuMI	CCSGG	1 cut(s)	850
Bsa29I	ATCGAT	1 cut(s)	947
BsaAI	YACGTR	1 cut(s)	858
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	238, 250, 1722, 2280, 2477
BsaWI	WCCGGW	1 cut(s)	2034
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 364, 2003
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	2034
BseBI	CCWGG	3 cut(s)	240, 1683, 1723
BseCI	ATCGAT	1 cut(s)	947
BseDI	CCNNGG	5 cut(s)	238, 250, 1722, 2280, 2477
BseGI	GGATG	8 cut(s)	490, 928, 1012, 1048, 1091, 1567, 1691, 1900
BseLI	CCNNNNNNNGG	3 cut(s)	118, 364, 2003
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	1 cut(s)	198
BsePI	GCGCGC	1 cut(s)	313
BseRI	GAGGAG	7 cut(s)	17, 64, 155, 206, 639, 707, 716
BseSI	GKGCMC	2 cut(s)	1957, 2349
BseXI	GCAGC	4 cut(s)	749, 997, 1076, 2069
BsgI	GTGCAG	1 cut(s)	1728
Bsh1236I	CGCG	5 cut(s)	225, 309, 315, 796, 1959
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	5 cut(s)	357, 1611, 1626, 2241, 2409
BshNI	GGYRCC	2 cut(s)	254, 1730
BshVI	ATCGAT	1 cut(s)	947
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	2473
BsiSI	CCGG	7 cut(s)	119, 345, 354, 365, 689, 849, 2035
BslI	CCNNNNNNNGG	3 cut(s)	118, 364, 2003
BsmAI	GTCTC	2 cut(s)	296, 1935
BsmI	GAATGC	1 cut(s)	2094
BsnI	GGCC	5 cut(s)	357, 1611, 1626, 2241, 2409
Bsp1286I	GDGCHC	3 cut(s)	1957, 2349, 2473
Bsp13I	TCCGGA	1 cut(s)	2034
Bsp1407I	TGTACA	1 cut(s)	1275
Bsp143I	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
BspANI	GGCC	5 cut(s)	357, 1611, 1626, 2241, 2409
BspCNI	CTCAG	1 cut(s)	691
BspDI	ATCGAT	1 cut(s)	947
BspEI	TCCGGA	1 cut(s)	2034
BspFNI	CGCG	5 cut(s)	225, 309, 315, 796, 1959
BspHI	TCATGA	2 cut(s)	657, 2486
BspLI	GGNNCC	4 cut(s)	256, 843, 1470, 1732
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	2478
BspT107I	GGYRCC	2 cut(s)	254, 1730
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	1275
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	5 cut(s)	238, 250, 1722, 2280, 2477
BssHII	GCGCGC	1 cut(s)	313
BssMI	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
BssNAI	GTATAC	1 cut(s)	861
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	594
BssT1I	CCWWGG	1 cut(s)	2280
Bst1107I	GTATAC	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	240, 1683, 1723
Bst4CI	ACNGT	7 cut(s)	265, 1078, 1256, 1477, 1520, 1792, 2227
Bst6I	CTCTTC	2 cut(s)	180, 2478
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	2 cut(s)	743, 1910
BstAUI	TGTACA	1 cut(s)	1275
BstBAI	YACGTR	1 cut(s)	858
BstC8I	GCNNGC	5 cut(s)	311, 315, 666, 1957, 2272
BstDEI	CTNAG	5 cut(s)	699, 911, 1227, 1288, 2141
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	8 cut(s)	490, 928, 1012, 1048, 1091, 1567, 1691, 1900
BstFNI	CGCG	5 cut(s)	225, 309, 315, 796, 1959
BstH2I	RGCGCY	2 cut(s)	258, 911
BstHHI	GCGC	8 cut(s)	227, 257, 315, 317, 398, 644, 910, 994
BstKTI	GATC	5 cut(s)	196, 382, 1648, 1846, 2173
BstMAI	GTCTC	2 cut(s)	296, 1935
BstMBI	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
BstMCI	CGRYCG	1 cut(s)	382
BstNI	CCWGG	3 cut(s)	240, 1683, 1723
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	4 cut(s)	238, 848, 1681, 1721
BstSLI	GKGCMC	2 cut(s)	1957, 2349
BstSNI	TACGTA	1 cut(s)	858
BstUI	CGCG	5 cut(s)	225, 309, 315, 796, 1959
BstV1I	GCAGC	4 cut(s)	749, 997, 1076, 2069
BstV2I	GAAGAC	1 cut(s)	1261
BstX2I	RGATCY	2 cut(s)	1843, 2170
BstYI	RGATCY	2 cut(s)	1843, 2170
BstZ17I	GTATAC	1 cut(s)	861
Bsu15I	ATCGAT	1 cut(s)	947
BsuRI	GGCC	5 cut(s)	357, 1611, 1626, 2241, 2409
BsuTUI	ATCGAT	1 cut(s)	947
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	8 cut(s)	490, 928, 1012, 1048, 1091, 1567, 1691, 1900
BtsI	GCAGTG	1 cut(s)	2118
BtsIMutI	CAGTG	2 cut(s)	1745, 2118
Cac8I	GCNNGC	5 cut(s)	311, 315, 666, 1957, 2272
CciI	TCATGA	2 cut(s)	657, 2486
CfoI	GCGC	8 cut(s)	227, 257, 315, 317, 398, 644, 910, 994
Cfr13I	GGNCC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	947
CseI	GACGC	1 cut(s)	1212
Csp6I	GTAC	4 cut(s)	706, 1276, 2116, 2414
CviQI	GTAC	4 cut(s)	706, 1276, 2116, 2414
DdeI	CTNAG	5 cut(s)	699, 911, 1227, 1288, 2141
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	5 cut(s)	195, 381, 1647, 1845, 2172
DpnII	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
EaeI	YGGCCR	1 cut(s)	1624
Eam1104I	CTCTTC	2 cut(s)	180, 2478
EarI	CTCTTC	2 cut(s)	180, 2478
Eco105I	TACGTA	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	2280
Eco147I	AGGCCT	1 cut(s)	2409
Eco32I	GATATC	1 cut(s)	2212
Eco57I	CTGAAG	2 cut(s)	249, 2109
EcoRI	GAATTC	1 cut(s)	1738
EcoRII	CCWGG	3 cut(s)	238, 1681, 1721
EcoRV	GATATC	1 cut(s)	2212
EcoT14I	CCWWGG	1 cut(s)	2280
EcoT22I	ATGCAT	1 cut(s)	1353
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	2280
FauI	CCCGC	2 cut(s)	302, 1964
FauNDI	CATATG	1 cut(s)	1120
FblI	GTMKAC	1 cut(s)	860
FokI	GGATG	8 cut(s)	497, 935, 1019, 1055, 1098, 1574, 1698, 1907
FspBI	CTAG	4 cut(s)	864, 2016, 2313, 2399
FspI	TGCGCA	2 cut(s)	397, 993
GlaI	GCGC	8 cut(s)	226, 256, 314, 316, 397, 643, 909, 993
HaeII	RGCGCY	2 cut(s)	258, 911
HaeIII	GGCC	5 cut(s)	357, 1611, 1626, 2241, 2409
HapII	CCGG	7 cut(s)	119, 345, 354, 365, 689, 849, 2035
HgaI	GACGC	1 cut(s)	1212
HhaI	GCGC	8 cut(s)	227, 257, 315, 317, 398, 644, 910, 994
Hin1I	GRCGYC	1 cut(s)	255
Hin6I	GCGC	8 cut(s)	225, 255, 313, 315, 396, 642, 908, 992
HinP1I	GCGC	8 cut(s)	225, 255, 313, 315, 396, 642, 908, 992
HincII	GTYRAC	2 cut(s)	558, 1249
HindII	GTYRAC	2 cut(s)	558, 1249
HindIII	AAGCTT	1 cut(s)	970
HpaII	CCGG	7 cut(s)	119, 345, 354, 365, 689, 849, 2035
HphI	GGTGA	5 cut(s)	227, 647, 830, 943, 2162
Hpy166II	GTNNAC	5 cut(s)	250, 558, 861, 1249, 2118
Hpy188I	TCNGA	6 cut(s)	145, 427, 714, 1972, 2170, 2478
Hpy8I	GTNNAC	5 cut(s)	250, 558, 861, 1249, 2118
Hpy99I	CGWCG	2 cut(s)	45, 269
HpyCH4III	ACNGT	7 cut(s)	265, 1078, 1256, 1477, 1520, 1792, 2227
HpyCH4IV	ACGT	4 cut(s)	339, 857, 1531, 2114
HpyF3I	CTNAG	5 cut(s)	699, 911, 1227, 1288, 2141
HpySE526I	ACGT	4 cut(s)	339, 857, 1531, 2114
Hsp92I	GRCGYC	1 cut(s)	255
HspAI	GCGC	8 cut(s)	225, 255, 313, 315, 396, 642, 908, 992
KasI	GGCGCC	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	2034
Kzo9I	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
LguI	GCTCTTC	1 cut(s)	2478
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	4 cut(s)	749, 997, 1076, 2069
MaeI	CTAG	4 cut(s)	864, 2016, 2313, 2399
MaeII	ACGT	4 cut(s)	339, 857, 1531, 2114
MaeIII	GTNAC	5 cut(s)	443, 1209, 1780, 1897, 2067
MalI	GATC	5 cut(s)	195, 381, 1647, 1845, 2172
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
MboII	GAAGA	5 cut(s)	167, 1229, 1261, 1666, 2465
MfeI	CAATTG	2 cut(s)	765, 2258
MflI	RGATCY	2 cut(s)	1843, 2170
MhlI	GDGCHC	3 cut(s)	1957, 2349, 2473
MlsI	TGGCCA	1 cut(s)	1626
MluNI	TGGCCA	1 cut(s)	1626
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	5 cut(s)	298, 344, 355, 778, 1788
MmeI	TCCRAC	2 cut(s)	984, 1811
Mox20I	TGGCCA	1 cut(s)	1626
Mph1103I	ATGCAT	1 cut(s)	1353
MroI	TCCGGA	1 cut(s)	2034
MroXI	GAANNNNTTC	1 cut(s)	2094
MscI	TGGCCA	1 cut(s)	1626
MseI	TTAA	8 cut(s)	56, 287, 330, 501, 1539, 1593, 1815, 2126
MslI	CAYNNNNRTG	5 cut(s)	287, 1034, 1136, 1356, 1889
Msp20I	TGGCCA	1 cut(s)	1626
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	7 cut(s)	119, 345, 354, 365, 689, 849, 2035
MspR9I	CCNGG	4 cut(s)	240, 850, 1683, 1723
MunI	CAATTG	2 cut(s)	765, 2258
Mva1269I	GAATGC	1 cut(s)	2094
MvaI	CCWGG	3 cut(s)	240, 1683, 1723
MvnI	CGCG	5 cut(s)	225, 309, 315, 796, 1959
NarI	GGCGCC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	850
NdeI	CATATG	1 cut(s)	1120
NdeII	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
NlaIV	GGNNCC	4 cut(s)	256, 843, 1470, 1732
NmuCI	GTSAC	1 cut(s)	1780
NsbI	TGCGCA	2 cut(s)	397, 993
NsiI	ATGCAT	1 cut(s)	1353
NspI	RCATGY	1 cut(s)	656
PagI	TCATGA	2 cut(s)	657, 2486
PalAI	GGCGCGCC	1 cut(s)	313
PauI	GCGCGC	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	2409
PciI	ACATGT	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	2478
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 1524
PctI	GAATGC	1 cut(s)	2094
PdmI	GAANNNNTTC	1 cut(s)	2094
PfeI	GAWTC	9 cut(s)	146, 422, 428, 472, 791, 944, 1062, 1177, 2372
PflFI	GACNNNGTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	1681
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	5 cut(s)	298, 344, 355, 778, 1787
PluTI	GGCGCC	1 cut(s)	258
PpsI	GAGTC	5 cut(s)	298, 344, 355, 778, 1787
Ppu21I	YACGTR	1 cut(s)	858
PscI	ACATGT	1 cut(s)	652
PshBI	ATTAAT	2 cut(s)	1815, 2126
PsiI	TTATAA	2 cut(s)	1698, 2444
Psp6I	CCWGG	3 cut(s)	238, 1681, 1721
PspGI	CCWGG	3 cut(s)	238, 1681, 1721
PspN4I	GGNNCC	4 cut(s)	256, 843, 1470, 1732
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	1843, 2170
PsyI	GACNNNGTC	1 cut(s)	263
PteI	GCGCGC	1 cut(s)	313
PvuI	CGATCG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	4 cut(s)	707, 1277, 2117, 2415
RsaNI	GTAC	4 cut(s)	706, 1276, 2116, 2414
RseI	CAYNNNNRTG	5 cut(s)	287, 1034, 1136, 1356, 1889
SapI	GCTCTTC	1 cut(s)	2478
SaqAI	TTAA	8 cut(s)	56, 287, 330, 501, 1539, 1593, 1815, 2126
Sau3AI	GATC	5 cut(s)	193, 379, 1645, 1843, 2170
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	707
SchI	GAGTC	5 cut(s)	298, 344, 355, 778, 1788
ScrFI	CCNGG	4 cut(s)	240, 850, 1683, 1723
SduI	GDGCHC	3 cut(s)	1957, 2349, 2473
SfoI	GGCGCC	1 cut(s)	256
SgsI	GGCGCGCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	5 cut(s)	287, 1034, 1136, 1356, 1889
SmlI	CTYRAG	3 cut(s)	518, 917, 1664
SmoI	CTYRAG	3 cut(s)	518, 917, 1664
SnaBI	TACGTA	1 cut(s)	858
SpeI	ACTAGT	1 cut(s)	863
SseBI	AGGCCT	1 cut(s)	2409
SspDI	GGCGCC	1 cut(s)	254
SspMI	CTAG	4 cut(s)	864, 2016, 2313, 2399
StuI	AGGCCT	1 cut(s)	2409
StyD4I	CCNGG	4 cut(s)	238, 848, 1681, 1721
StyI	CCWWGG	1 cut(s)	2280
TaaI	ACNGT	7 cut(s)	265, 1078, 1256, 1477, 1520, 1792, 2227
TaiI	ACGT	4 cut(s)	342, 860, 1534, 2117
TaqI	TCGA	4 cut(s)	210, 378, 475, 947
TaqII	GACCGA	1 cut(s)	206
TatI	WGTACW	2 cut(s)	705, 1275
TauI	GCSGC	7 cut(s)	94, 97, 100, 103, 106, 749, 764
TfiI	GAWTC	9 cut(s)	146, 422, 428, 472, 791, 944, 1062, 1177, 2372
Tru1I	TTAA	8 cut(s)	56, 287, 330, 501, 1539, 1593, 1815, 2126
Tru9I	TTAA	8 cut(s)	56, 287, 330, 501, 1539, 1593, 1815, 2126
TscAI	CASTG	2 cut(s)	1752, 2125
TseFI	GTSAC	1 cut(s)	1780
TseI	GCWGC	4 cut(s)	737, 1010, 1089, 2057
Tsp45I	GTSAC	1 cut(s)	1780
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	1752, 2125
Tth111I	GACNNNGTC	1 cut(s)	263
VspI	ATTAAT	2 cut(s)	1815, 2126
XapI	RAATTY	4 cut(s)	1439, 1658, 1738, 2362
XceI	RCATGY	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	2094
XspI	CTAG	4 cut(s)	864, 2016, 2313, 2399
ZrmI	AGTACT	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	1353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.